MOOD publications

MOOD project is at the forefront of European research of infectious disease surveillance and modelling from a data science perspective, investigating the impact of global warming on disease outbreaks, and proposing innovations for building of One Health systems across Europe and the world. 

In the table below all publications to which the MOOD project contributed are listed. Use the filter to select the most relevant articles.

166 entries « 5 of 9 »
86.

Colosi, Elisabetta; Bassignana, Giulia; Barrat, Alain; Colizza, Vittoria

Modelling COVID-19 in school settings to evaluate prevention and control protocols Journal Article

In: Anaesthesia Critical Care & Pain Medicine, vol. 41, no. 2, pp. 101047, 2022, ISSN: 2352-5568.

Links | BibTeX | Tags: Covid-19 (Coronavirus), OpenDataSet

85.

Valentin, Sarah; Lancelot, Renaud; Roche, Mathieu

Fusion of spatiotemporal and thematic features of textual data for animal disease surveillance Journal Article

In: Information Processing in Agriculture, 2022, ISSN: 2214-3173.

Abstract | Links | BibTeX | Tags: Text mining

84.

Faucher, Benjamin; Assab, Rania; Roux, Jonathan; Levy-Bruhl, Daniel; Kiem, Cécile Tran; Cauchemez, Simon; Zanetti, Laura; Colizza, Vittoria; Boëlle, Pierre-Yves; Poletto, Chiara

Agent-based modelling of reactive vaccination of workplaces and schools against COVID-19 Journal Article

In: Nature Communications, vol. 13, no. 1414, 2022.

Abstract | Links | BibTeX | Tags: OpenDataSet

83.

Bianco, Luca; Moser, Mirko; Silverjand, Andrea; Micheletti, Diego; Lorenzin, Giovanni; Collini, Lucia; Barbareschi, Mattia; Lanzafame, Paolo; Segata, Nicola; Pindo, Massimo; Franceschi, Pietro; Rota-Stabelli, Omar; Rizzoli, Annapaola; Fontana, Paolo; Donati, Claudio

On the Origin and Propagation of the COVID-19 Outbreak in the Italian Province of Trento, a Tourist Region of Northern Italy Journal Article

In: Viruses, vol. 14, iss. 3, no. 580, 2022, ISSN: 1999-4915.

Abstract | Links | BibTeX | Tags: Covid-19 (Coronavirus), OpenDataSet

82.

Manica, Mattia; Litvinova, Maria; Bellis, Alfredo De; Guzzetta, Giorgio; Mancuso, Pamela; Vicentini, Massimo; Venturelli, Francesco; Bisaccia, Eufemia; Bento, Ana I.; Poletti, Piero; Marziano, Valentina; Zardini, Agnese; d'Andrea, Valeria; Trentini, Filippo; Bella, Antonino; Riccardo, Flavia; Pezzotti, Patrizio; Ajelli, Marco; Rossi, Paolo Giorgi; Merler, Stefano; the Reggio Emilia COVID-19 Working Group,

Estimation of the incubation period and generation time of SARS-CoV-2 Alpha and Delta variants from contact tracing data Journal Article

In: arXiv, 2022.

Abstract | Links | BibTeX | Tags: Covid-19 (Coronavirus)

81.

Mencattelli, Giulia

West Nile Virus in Africa: current epidemiological situation and knowledge gaps Journal Article

In: 2022.

Abstract | Links | BibTeX | Tags: WNV (West Nile Virus)

80.

Blokker, Tim; Baele, Guy; Lemey, Philippe; Dellicour, Simon

Phycova — a tool for exploring covariates of pathogen spread Journal Article

In: Virus Evolution, vol. 8, iss. 1, 2022, ISSN: 2057-1577, (veac015).

Abstract | Links | BibTeX | Tags: OpenDataSet

79.

Stefanelli, Paola; Group, COVID-19 National Microbiology Surveillance Study

Co-circulation of SARS-CoV-2 Alpha and Gamma variants in Italy, February and March 2021 Journal Article

In: Eurosurveillance, vol. 27, no. 5, pp. 2100429, 2022.

Abstract | Links | BibTeX | Tags: Covid-19 (Coronavirus)

78.

Liu, Quan-Hui; Zhang, Juanjuan; Peng, Cheng; Litvinova, Maria; Huang, Shudong; Poletti, Piero; Trentini, Filippo; Guzzetta, Giorgio; Marziano, Valentina; Zhou, Tao; Viboud, Cecile; Bento, Ana I.; Lv, Jiancheng; Vespignani, Alessandro; Merler, Stefano; Yu, Hongjie; Ajelli, Marco

Model-based evaluation of alternative reactive class closure strategies against COVID-19. Journal Article

In: 2022.

Abstract | Links | BibTeX | Tags: Covid-19 (Coronavirus), OpenDataSet

77.

Roche, Mathieu; Teisseire, Maguelonne

Integrating Textual Data into Heterogeneous Data Ingestion Processing Conference

2021 IEEE International Conference on Big Data (Big Data), IEEE, Orlando, FL, USA, 2022, ISBN: 978-1-6654-3902-2.

Abstract | Links | BibTeX | Tags: Text mining

76.

Mencattelli, Giulia; Ndione, Marie Henriette Dior; Rosà, Roberto; Marini, Giovanni; Diagne, Cheikh Tidiane; Moussa, Moise; Fall, Gamou; Faye, Ousmane; Diallo, Mawlouth; Faye, Oumar; Savini, Giovanni; Rizzoli, Annapaola

Epidemiology of West Nile virus in Africa: An underestimated threat Journal Article

In: PLOS Neglected Tropical Diseases, vol. 16, no. 1, pp. 1-31, 2022.

Abstract | Links | BibTeX | Tags: OpenDataSet, WNV (West Nile Virus)

75.

Li, Sabrina L.; Acosta, André L.; Hill, Sarah C.; Brady, Oliver J.; Almeida, Marco A. B. de; da C. Cardoso, Jader; Hamlet, Arran; Mucci, Luis F.; de Deus, Juliana Telles; Iani, Felipe C.; Alexander, Neil S.; Wint, William G. R.; Pybus, Oliver G.; Kraemer, Moritz; Messina, Nuno R. Fariaand Jane P.

Mapping environmental suitability of Haemagogus and Sabethes spp. mosquitoes to understand sylvatic transmission risk of yellow fever virus in Brazil Journal Article

In: PLOS Neglected Tropical Diseases, vol. 16, pp. 1-21, 2022.

Abstract | Links | BibTeX | Tags: OpenDataSet

74.

Viana, Raquel; Moyo, Sikhulile; Amoako, Daniel G; Tegally, Houriiyah; Scheepers, Cathrine; Althaus, Christian L; Anyaneji, Ugochukwu J; Bester, Phillip A; Boni, Maciej F; Chand, Mohammed; others,

Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa Journal Article

In: Nature, vol. 603, no. 7902, pp. 679-686, 2022.

Abstract | Links | BibTeX | Tags: Covid-19 (Coronavirus), OpenDataSet

73.

Syed, Mehtab; Arsevska, Elena; Roche, Mathieu; Teisseire, Maguelonne

Feature Selection for Sentiment Classification of COVID-19 Tweets: H-TFIDF Featuring BERT Proceedings Article

In: SciTePress, (Ed.): pp. 648-656, 2022, ISBN: 978-989-758-552-4.

Abstract | Links | BibTeX | Tags: Covid-19 (Coronavirus), OpenDataSet, Text mining

72.

Planas, Delphine; Saunders, Nell; Maes, Piet; Guivel-Benhassine, Florence; Planchais, Cyril; Buchrieser, Julian; Bolland, William-Henry; Porrot, Françoise; Staropoli, Isabelle; Lemoine, Frederic; Péré, Hélène; Veyer, David; Puech, Julien; Rodary, Julien; Baele, Guy; Dellicour, Simon; Raymenants, Joren; Gorissen, Sarah; Geenen, Caspar; Vanmechelen, Bert; Wawina-Bokalanga, Tony; Martí-Carreras, Joan; Cuypers, Lize; Sève, Aymeric; Hocqueloux, Laurent; Prazuck, Thierry; Rey, Félix A.; Simon-Loriere, Etienne; Bruel, Timothée; Mouquet, Hugo; André, Emmanuel; Schwart, Olivier

Considerable escape of SARS-CoV-2 Omicron to antibody neutralization Journal Article

In: Nature, vol. 602, pp. 671–675, 2021.

Abstract | Links | BibTeX | Tags: Covid-19 (Coronavirus), OpenDataSet

71.

Mazzoli, Mattia; Domenico, Laura Di; Consortium, EMERGEN; Colizza, Vittoria

Early assessment of the Omicron variant’s presence and growth rate in regions of France Technical Report

2021.

Abstract | Links | BibTeX | Tags: Covid-19 (Coronavirus)

70.

Marziano, Valentina; al.,

The effect of COVID-19 vaccination in Italy and perspectives for living with the virus Journal Article

In: Nature Communications, vol. 12, no. 7272, 2021.

Abstract | Links | BibTeX | Tags: Covid-19 (Coronavirus), OpenDataSet

69.

Valdano, Eugenio; Lee, Jonggul; Rubrichi, Stefania; Colizza, Vittoria

Mobility during the first week of the second lockdown in France Technical Report

2021.

Abstract | Links | BibTeX | Tags: Covid-19 (Coronavirus), OpenDataSet

68.

Domenico, Laura Di

Adherence and sustainability of interventions informing optimal control against the COVID-19 pandemic Journal Article

In: Nature Communications, vol. 1, no. 57, 2021.

Abstract | Links | BibTeX | Tags: Covid-19 (Coronavirus), OpenDataSet

67.

Cereda, Danilo; Manica, Mattia; Tirani, Marcello; Rovida, Francesca; Demicheli, Vittorio; Ajelli, Marco; Poletti, Piero; Trentini, Filippo; Guzzetta, Giorgio; Marziano, Valentina; Piccarreta, Raffaella; Barone, Antonio; Magoni, Michele; Deandrea, Silvia; Diurno, Giulio; Lombardo, Massimo; Faccini, Marino; Pan, Angelo; Bruno, Raffaele; Pariani, Elena; Grasselli, Giacomo; Piatti, Alessandra; Gramegna, Maria; Baldanti, Fausto; Melegaro, Alessia; Merler, Stefano

The early phase of the COVID-19 epidemic in Lombardy, Italy Journal Article

In: Epidemics, vol. 37, pp. 100528, 2021, ISSN: 1755-4365.

Abstract | Links | BibTeX | Tags: Covid-19 (Coronavirus), OpenDataSet

166 entries « 5 of 9 »

Top-cited MOOD publications

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK
Plessis et al., 2020
Evolution and epidemic spread of SARS-CoV-2 in Brazil
Darlan et al., 2020
Preparedness and vulnerability of African countries against importations of COVID-19: a modelling study
Gilbert et al., 2020
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence
Moritz et al., 2020
Crowding and the shape of COVID-19 epidemics
Rader et al., 2020
Potential short-term outcome of an uncontrolled COVID-19 epidemic in Lombardy, Italy, February to March 2020
Guzzetta et al., 2020
Novel coronavirus (2019-nCoV) early-stage importation risk to Europe, January 2020
Pullano et al., 2020