MOOD publications

MOOD project is at the forefront of European research of infectious disease surveillance and modelling from a data science perspective, investigating the impact of global warming on disease outbreaks, and proposing innovations for building of One Health systems across Europe and the world. 

In the table below are listed all MOOD publications. Use the filter to select the most relevant articles.

103 entries « 2 of 6 »

Agoti, Charles N; Ochola-Oyier, Lynette Isabella; Dellicour, Simon; Mohammed, Khadija Said; Lambisia, Arnold W; de Laurent, Zaydah R; Morobe, John M; Mburu, Maureen W; Omuoyo, Donwilliams O; Ongera, Edidah M; Ndwiga, Leonard; Maitha, Eric; Kitole, Benson; Suleiman, Thani; Mwakinangu, Mohamed; Nyambu, John K; Otieno, John; Salim, Barke; Musyoki, Jennifer; Murunga, Nickson; Otieno, Edward; Kiiru, John N; Kasera, Kadondi; Amoth, Patrick; Mwangangi, Mercy; Aman, Rashid; Kinyanjui, Samson; Warimwe, George; Phan, My; Agweyu, Ambrose; Cotten, Matthew; Barasa, Edwine; Tsofa, Benjamin; Nokes, D James; Bejon, Philip; Githinji, George

Transmission networks of SARS-CoV-2 in Coastal Kenya during the first two waves: A retrospective genomic study Journal Article

In: eLife, vol. 11, pp. e71703, 2022, ISSN: 2050-084X.

Abstract | Links | BibTeX | Tags: Africa, COVID-19, epidemiology, genome, transmission


Giesen, Christine; Herrador, Zaida; Fernandez-Martinez, Beatriz; Figuerola, Jordi; Gangoso, Laura; Vazquez, Ana; Gómez-Barroso, Diana

A systematic review of environmental factors related to WNV circulation in European and Mediterranean countries Journal Article

In: One Health, vol. 16, pp. 100478, 2022, ISSN: 2352-7714.

Abstract | Links | BibTeX | Tags: Climate, culex, Emerging infectious diseases, Europe, Mediterranean, West Nile Virus


Dellicour, Simon; Lemey, Philippe; Suchard, Marc A; Gilbert, Marius; Baele, Guy

Accommodating sampling location uncertainty in continuous phylogeography Journal Article

In: Virus Evolution, vol. 8, iss. 1, no. 1, 2022, ISSN: 2057-1577.

Abstract | Links | BibTeX | Tags: Bayesian inference, BEAST, continuous phylogeography, host species, sampling precision, virus


Wongnak, Phrutsamon; Bord, Séverine; Jacquot, Maude; Agoulon, Albert; Beugnet, Frédéric; Bournez, Laure; Cèbe, Nicolas; Chevalier, Adélie; Cosson, Jean-François; Dambrine, Naïma; Hoch, Thierry; Huard, Frédéric; Korboulewsky, Nathalie; Lebert, Isabelle; Madouasse, Aurélien; Mårell, Anders; Moutailler, Sara; Plantard, Olivier; Pollet, Thomas; Poux, Valérie; René-Martellet, Magalie; Vayssier-Taussat, Muriel; Verheyden, Hélène; Vourc’h, Gwenaël; Chalvet-Monfray, Karine

Meteorological and climatic variables predict the phenology of Ixodes ricinus nymph activity in France, accounting for habitat heterogeneity. Journal Article

In: Nature Scientific Reports, vol. 7833, iss. 12, 2022.

Abstract | Links | BibTeX | Tags: Climate, climate change, disease ecology, France, infectious diseases, ixodes, ticks, vector


Alam, Syed Mehtab; Arsevska, Elena; Roche, Mathieu; Teisseire, Maguelonne

A Data-Driven Score Model to Assess Online News Articles in Event-Based Surveillance System Conference

Information Management and Big Data, vol. 1577, Springer International Publishing, 2022.

Abstract | BibTeX | Tags: data quality, natural language processing, Text mining


Colosi, Elisabetta; Bassignana, Giulia; Contreras, Diego Andrés; Poirier, Canelle; Boëlle, Pierre-Yves; Cauchemez, Simon; Yazdanpanah, Yazdan; Lina, Bruno; Fontanet, Arnaud; Barrat, Alain; others,

Screening and vaccination against COVID-19 to minimise school closure: a modelling study Journal Article

In: The Lancet Infectious Diseases, vol. 2, iss. 7, pp. Pages 977-989, 2022.

Links | BibTeX | Tags:


Colosi, Elisabetta; Bassignana, Giulia; Barrat, Alain; Colizza, Vittoria

Modelling COVID-19 in school settings to evaluate prevention and control protocols Journal Article

In: Anaesthesia Critical Care & Pain Medicine, vol. 41, no. 2, pp. 101047, 2022, ISSN: 2352-5568.

Links | BibTeX | Tags: iterative screening, modelling, Non-pharmaceutical interventions, SARS-CoV-2, school


Valentin, Sarah; Lancelot, Renaud; Roche, Mathieu

Fusion of spatiotemporal and thematic features of textual data for animal disease surveillance Journal Article

In: Information Processing in Agriculture, 2022, ISSN: 2214-3173.

Abstract | Links | BibTeX | Tags: Animal disease surveillance, fusion, ranking, Text mining


Faucher, Benjamin; Assab, Rania; Roux, Jonathan; Levy-Bruhl, Daniel; Kiem, Cécile Tran; Cauchemez, Simon; Zanetti, Laura; Colizza, Vittoria; Boëlle, Pierre-Yves; Poletto, Chiara

Agent-based modelling of reactive vaccination of workplaces and schools against COVID-19 Journal Article

In: Nature Communications, vol. 13, no. 1414, 2022.

Abstract | Links | BibTeX | Tags: COVID-19


Bianco, Luca; Moser, Mirko; Silverj, Andrea; Micheletti, Diego; Lorenzin, Giovanni; Collini, Lucia; Barbareschi, Mattia; Lanzafame, Paolo; Segata, Nicola; Pindo, Massimo; Franceschi, Pietro; Rota-Stabelli, Omar; Rizzoli, Annapaola; Fontana, Paolo; Donati, Claudio

On the Origin and Propagation of the COVID-19 Outbreak in the Italian Province of Trento, a Tourist Region of Northern Italy Journal Article

In: Viruses, vol. 14, iss. 3, no. 580, 2022, ISSN: 1999-4915.

Abstract | Links | BibTeX | Tags: COVID-19, genome, SARS-CoV-2, transmission


Blokker, Tim; Baele, Guy; Lemey, Philippe; Dellicour, Simon

Phycova — a tool for exploring covariates of pathogen spread Journal Article

In: Virus Evolution, vol. 8, iss. 1, 2022, ISSN: 2057-1577, (veac015).

Abstract | Links | BibTeX | Tags: BEAST, covariates, discrete phylogeography, generalized linear model, linear regression, pathogen spread, PhyCovA, visualization


Roche, Mathieu; Teisseire, Maguelonne

Integrating Textual Data into Heterogeneous Data Ingestion Processing Conference

2021 IEEE International Conference on Big Data (Big Data), IEEE, Orlando, FL, USA, 2022, ISBN: 978-1-6654-3902-2.

Abstract | Links | BibTeX | Tags: data integration, data mining, image analysis, natural language processing, Text mining


Mencattelli, Giulia; Ndione, Marie Henriette Dior; Rosà, Roberto; Marini, Giovanni; Diagne, Cheikh Tidiane; Diagne, Moussa Moise; Fall, Gamou; Faye, Ousmane; Diallo, Mawlouth; Faye, Oumar; Savini, Giovanni; Rizzoli, Annapaola

Epidemiology of West Nile virus in Africa: An underestimated threat Journal Article

In: PLOS Neglected Tropical Diseases, vol. 16, no. 1, pp. 1-31, 2022.

Abstract | Links | BibTeX | Tags: Africa, birds, culex quiquefasciatus, egypt, Europe, mosquitoes, virus testing, West Nile Virus


Li, Sabrina L.; Acosta, André L.; Hill, Sarah C.; Brady, Oliver J.; de Almeida, Marco A. B.; Cardoso, Jader da C.; Hamlet, Arran; Mucci, Luis F.; Telles de Deus, Juliana; Iani, Felipe C. M.; Alexander, Neil S.; Wint, G. R. William; Pybus, Oliver G.; Kraemer, Moritz U. G.; Faria, Nuno R.; Messina, Jane P.

Mapping environmental suitability of Haemagogus and Sabethes spp. mosquitoes to understand sylvatic transmission risk of yellow fever virus in Brazil Journal Article

In: PLOS Neglected Tropical Diseases, vol. 16, pp. 1-21, 2022.

Abstract | Links | BibTeX | Tags:


Viana, Raquel; Moyo, Sikhulile; Amoako, Daniel G; Tegally, Houriiyah; Scheepers, Cathrine; Althaus, Christian L; Anyaneji, Ugochukwu J; Bester, Phillip A; Boni, Maciej F; Chand, Mohammed; others,

Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa Journal Article

In: Nature, vol. 603, no. 7902, pp. 679-686, 2022.

Abstract | Links | BibTeX | Tags: epidemiology, Molecular evolution, SARS-CoV-2


Syed., Mehtab; Arsevska., Elena; Roche., Mathieu; Teisseire., Maguelonne

Feature Selection for Sentiment Classification of COVID-19 Tweets: H-TFIDF Featuring BERT Journal Article

In: Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies - HEALTHINF, pp. 648-656, 2022, ISBN: 978-989-758-552-4.

Abstract | Links | BibTeX | Tags: Feature selection, sentiment analysis, Text mining, Twitter


Valentina; Guzzetta Marziano, Giorgio; Mammone

The effect of COVID-19 vaccination in Italy and perspectives for living with the virus Journal Article

In: vol. 12, no. 7272, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, vaccination


Valdano, Eugenio; Lee, Jonggul; Rubrichi, Stefania; Colizza, Vittoria

Mobility during the first week of the second lockdown in France Technical Report


Abstract | Links | BibTeX | Tags: COVID-19, France, lock-down, surveillance


Laura; E. Sabbatini Di Domenico, Chiara; Boëlle

Adherence and sustainability of interventions informing optimal control against the COVID-19 pandemic Journal Article

In: Nature Communications, vol. 1, no. 57, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, OpenDataSet


Cereda, Danilo; Manica, Mattia; Tirani, Marcello; Rovida, Francesca; Demicheli, Vittorio; Ajelli, Marco; Poletti, Piero; Trentini, Filippo; Guzzetta, Giorgio; Marziano, Valentina; Piccarreta, Raffaella; Barone, Antonio; Magoni, Michele; Deandrea, Silvia; Diurno, Giulio; Lombardo, Massimo; Faccini, Marino; Pan, Angelo; Bruno, Raffaele; Pariani, Elena; Grasselli, Giacomo; Piatti, Alessandra; Gramegna, Maria; Baldanti, Fausto; Melegaro, Alessia; Merler, Stefano

The early phase of the COVID-19 epidemic in Lombardy, Italy Journal Article

In: Epidemics, vol. 37, pp. 100528, 2021, ISSN: 1755-4365.

Abstract | Links | BibTeX | Tags: Coronavirus, COVID-19, epidemiology, Lombardy outbreak, reproduction number, SARS-CoV-2, Transmission dynamics

103 entries « 2 of 6 »

Top-cited MOOD publications

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK
Plessis et al., 2020
Evolution and epidemic spread of SARS-CoV-2 in Brazil
Darlan et al., 2020
Preparedness and vulnerability of African countries against importations of COVID-19: a modelling study
Gilbert et al., 2020
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence
Moritz et al., 2020
Crowding and the shape of COVID-19 epidemics
Rader et al., 2020
Potential short-term outcome of an uncontrolled COVID-19 epidemic in Lombardy, Italy, February to March 2020
Guzzetta et al., 2020
Novel coronavirus (2019-nCoV) early-stage importation risk to Europe, January 2020
Pullano et al., 2020