MOOD publications

MOOD project is at the forefront of European research of infectious disease surveillance and modelling from a data science perspective, investigating the impact of global warming on disease outbreaks, and proposing innovations for building of One Health systems across Europe and the world. 

In the table below are listed all MOOD publications. Use the filter to select the most relevant articles.

71 entries « 2 of 4 »
51.

Huang, Bo; Wang, Jionghua; Cai, Jixuan; Yao, Shiqi; Chan, Paul Kay Sheung; Tam, Tony Hong-wing; Hong, Ying-Yi; Ruktanonchai, Corrine W.; Carioli, Alessandra; Floyd, Jessica R.; Ruktanonchai, Nick W.; Yang, Weizhong; Li, Zhongjie; Tatem, Andrew J.; Lai, Shengjie

Integrated vaccination and physical distancing interventions to prevent future COVID-19 waves in Chinese cities Journal Article

In: Nature Human Behaviour, vol. 5, pp. 695–705, 2021.

Abstract | Links | BibTeX | Tags: China, COVID-19, epidemiology, vaccine

50.

Marini, Giovanni; Manica, Mattia; Delucchi, Luca; Pugliese, Andrea; Ros`a, Roberto

Spring temperature shapes West Nile virus transmission in Europe Journal Article

In: Acta Tropica, vol. 215, pp. 105796, 2021.

Abstract | Links | BibTeX | Tags: Animal disease surveillance, Climate, Environmental change, Italy, West Nile Virus

49.

Ingelbeen, Brecht; Peckeu, Laur`ene; Laga, Marie; Hendrix, Ilona; Neven, Inge; Sande, Marianne AB; Kleef, Esther

Reducing contacts to stop SARS-CoV-2 transmission during the second pandemic wave in Brussels, Belgium, August to November 2020 Journal Article

In: Eurosurveillance, vol. 26, no. 7, pp. 2100065, 2021.

Abstract | Links | BibTeX | Tags: Belgium, COVID-19, epidemiology, Model, school, transmission

48.

Valentin, Sarah; Lancelot, Renaud; Roche, Mathieu

Identifying associations between epidemiological entities in news data for animal disease surveillance Journal Article

In: Artificial Intelligence in Agriculture, vol. 5, pp. 163-174, 2021, ISSN: 2589-7217.

Abstract | Links | BibTeX | Tags: Animal disease surveillance, Event extraction, Text mining

47.

Li, Sabrina L; Messina, Jane P; Pybus, Oliver G; Kraemer, Moritz U G; Gardner, Lauren

A review of models applied to the geographic spread of Zika virus Journal Article

In: Transactions of The Royal Society of Tropical Medicine and Hygiene, vol. 115, no. 9, pp. 956-964, 2021, ISSN: 0035-9203.

Abstract | Links | BibTeX | Tags: Animal disease surveillance, Event extraction, Text mining, Zika

46.

Rodrique, Kafando; Decoupes, Rémy; Valentin, Sarah; Sautot, Lucile; Teisseire, Maguelonne; Roche, Mathieu

ITEXT-BIO: Intelligent Term EXTraction for BIOmedical analysis Journal Article

In: Health Information Science and Systems, vol. 9, 2021.

Abstract | Links | BibTeX | Tags: Biomedical terminology, Intelligent analysis, Terminology extraction

45.

Poletti, Piero; Tirani, Marcello; Cereda, Danilo; Trentini, Filippo; Guzzetta, Giorgio; Sabatino, Giuliana; Marziano, Valentina; Castrofino, Ambra; Grosso, Francesca; Castillo, Gabriele Del; others,

Association of age with likelihood of developing symptoms and critical disease among close contacts exposed to patients with confirmed sars-cov-2 infection in italy Journal Article

In: JAMA network open, vol. 4, no. 3, pp. e211085–e211085, 2021.

Links | BibTeX | Tags: Contact tracing, COVID-19, Italy

44.

Plessis, Louis; McCrone, John T.; Zarebski, Alexander E.; Hill, Verity; Ruis, Christopher; Gutierrez, Bernardo; Raghwani, Jayna; Ashworth, Jordan; Colquhoun, Rachel; Connor, Thomas R.; Faria, Nuno R.; Jackson, Ben; Loman, Nicholas J.; O’Toole, Áine; Nicholls, Samuel M.; Parag, Kris V.; Scher, Emily; Vasylyeva, Tetyana I.; Volz, Erik M.; Watts, Alexander; Bogoch, Isaac I.; Khan, Kamran; null,; Aanensen, David M.; Kraemer, Moritz U. G.; Rambaut, Andrew; Pybus, Oliver G.

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK Journal Article

In: Science, vol. 371, no. 6530, pp. 708-712, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, epidemiology, genome, phylogenetic, travel, United Kingdom

43.

Domenico, Laura Di; Pullano, Giulia; Sabbatini, Chiara E.; Bo""elle, Pierre-Yves; Colizza, Vittoria

Modelling safe protocols for reopening schools during the COVID-19 pandemic in France Journal Article

In: medRxiv, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, France, Model, school

42.

Valentin, Sarah; Mercier, Alizé; Lancelot, Renaud; Roche, Mathieu; Arsevska, Elena

Monitoring online media reports for early detection of unknown diseases: Insight from a retrospective study of COVID-19 emergence Journal Article

In: Transboundary and emerging diseases, vol. 68, no. 3, pp. 981–986, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, data mining, EBS, Event extraction, media extraction, monitoring, ProMed

41.

MacLean, Oscar A; Lytras, Spyros; Weaver, Steven; Singer, Joshua B; Boni, Maciej F; Lemey, Philippe; Pond, Sergei L Kosakovsky; Robertson, David L

Natural selection in the evolution of SARS-CoV-2 in bats created a generalist virus and highly capable human pathogen Journal Article

In: PLoS biology, vol. 19, no. 3, pp. e3001115, 2021.

Abstract | BibTeX | Tags: COVID-19, genome

40.

Kraemer, MUG; Hill, V; Ruis, C; Dellicour, S; Bajaj, S; McCrone, JT; Baele, G; Parag, KV; Battle, AL; Gutierrez, B; Jackson, B; Colquhoun, R; O'Toole, A; Klein, B; Vespignani, A; Consortium, COVID-19 Genomics UK (COG-UK); Volz, E; Faria, NR; Aanensen, DM; NJ, NJ Loman; du Plessis, L; Cauchemez, S; A, A Rambaut; SV, SV Scarpino; Pybus, OG

Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence Journal Article

In: Science, vol. 373, no. 6557, pp. 889-895, 2021.

Abstract | Links | BibTeX | Tags: big data, COVID-19, genome, mobility, phylogenetic, United Kingdom, variants

39.

Hu, Maogui; Wang, Jinfeng; Lin, Hui; Ruktanonchai, Corrine W; Xu, Chengdong; Meng, Bin; Zhang, Xin; Carioli, Alessandra; Feng, Yuqing; Yin, Qian; Floyd, Jessica R; Ruktanonchai, Nick W; Li, Zhongjie; Yang, Weizhong; Tatem, Andrew J; Lai, Shengjie

Risk of SARS-CoV-2 Transmission among Air Passengers in China Journal Article

In: Clinical Infectious Diseases, 2021, ISSN: 1058-4838, (ciab836).

Abstract | Links | BibTeX | Tags: airplanes, COVID-19, mobility, transmission

38.

Trentini, Filippo; Marziano, Valentina; Guzzetta, Giorgio; Tirani, Marcello; Cereda, Danilo; Poletti, Piero; Piccarreta, Raffaella; Barone, Antonio; Preziosi, Giuseppe; Arduini, Fabio; Valle, Petra Giulia Della; Zanella, Alberto; Grosso, Francesca; Castillo, Gabriele; Castrofino, Ambra; Grasselli, Giacomo; Melegaro, Alessia; Piatti, Alessandra; Andreassi, Aida; Gramegna, Maria; Ajelli, Marco; Merler, Stefano

The pressure on healthcare system and intensive care utilization during the COVID-19 outbreak in the Lombardy region: a retrospective observational study on 43,538 hospitalized patients Journal Article

In: American Journal of Epidemiology, 2021, ISSN: 0002-9262, (kwab252).

Abstract | Links | BibTeX | Tags: big data, COVID-19, epidemiology, ICU, Italy, Public Health

37.

Manica, Mattia; Guzzetta, Giorgio; Riccardo, Flavia; Valenti, Antonio; Poletti, Piero; Marziano, Valentina; Trentini, Filippo; Andrianou, Xanthi; Urdiales, Alberto Mateo; Manso, Martina; Fabiani, Massimo; Vescio, Maria Fenicia; Spuri, Matteo; Petrone, Daniele; Bella, Antonino; Iavicoli, Sergio; Ajelli, Marco; Brusaferro, Silvio; Pezzotti, Patrizio; Merler, Stefano

Impact of tiered restrictions on human activities and the epidemiology of the second wave of COVID-19 in Italy Journal Article

In: medRxiv, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, Italy, measures, Public Health, surveillance

36.

Manica, Mattia; Guzzetta, Giorgio; Riccardo, Flavia; Valenti, Antonio; Poletti, Piero; Marziano, Valentina; Trentini, Filippo; Andrianou, Xanthi; Urdiales, Alberto Mateo; Manso, Martina Del; others,

Impact of tiered restrictions on human activities and the epidemiology of the second wave of COVID-19 in Italy Journal Article

In: medRxiv, 2021.

BibTeX | Tags:

35.

Valdano, Eugenio; Lee, Jonggul; Bansal, Shweta; Rubrichi, Stefania; Colizza, Vittoria

Highlighting socio-economic constraints on mobility reductions during COVID-19 restrictions in France can inform effective and equitable pandemic response Journal Article

In: Journal of Travel Medicine, vol. 28, no. 4, 2021, ISSN: 1708-8305, (taab045).

Links | BibTeX | Tags: COVID-19, France, mobility, social science

34.

López, Jesús A. Moreno; García, Beatriz Arregui; Bentkowski, Piotr; Bioglio, Livio; Pinotti, Francesco; Boëlle, Pierre-Yves; Barrat, Alain; Colizza, Vittoria; Poletto, Chiara

Anatomy of digital contact tracing: Role of age, transmission setting, adoption, and case detection Journal Article

In: Science Advances, vol. 7, no. 15, pp. eabd8750, 2021.

Abstract | Links | BibTeX | Tags: Contact tracing, COVID-19, Human health, surveillance

33.

Pullano, Giulia; Domenico, Laura Di; Sabbatini, Chiara E; Valdano, Eugenio; Turbelin, Clément; Debin, Marion; Guerrisi, Caroline; Kengne-Kuetche, Charly; Souty, Cécile; Hanslik, Thomas; others,

Underdetection of cases of COVID-19 in France threatens epidemic control Journal Article

In: Nature, vol. 590, no. 7844, pp. 134–139, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, epidemiology, France, surveillance

32.

Lemey, Philippe; Ruktanonchai, Nick; Hong, Samuel L; Colizza, Vittoria; Poletto, Chiara; den Broeck, Frederik Van; Gill, Mandev S; Ji, Xiang; Levasseur, Anthony; Munnink, Bas B Oude; others,

Untangling introductions and persistence in COVID-19 resurgence in Europe Journal Article

In: Nature, vol. 595, no. 7869, pp. 713–717, 2021.

Abstract | Links | BibTeX | Tags: big data, COVID-19, epidemiology, Europe, measures, mobility

71 entries « 2 of 4 »

Top-cited MOOD publications

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK
Plessis et al., 2020
Evolution and epidemic spread of SARS-CoV-2 in Brazil
Darlan et al., 2020
Preparedness and vulnerability of African countries against importations of COVID-19: a modelling study
Gilbert et al., 2020
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence
Moritz et al., 2020
Crowding and the shape of COVID-19 epidemics
Rader et al., 2020
Potential short-term outcome of an uncontrolled COVID-19 epidemic in Lombardy, Italy, February to March 2020
Guzzetta et al., 2020
Novel coronavirus (2019-nCoV) early-stage importation risk to Europe, January 2020
Pullano et al., 2020