MOOD publications

MOOD project is at the forefront of European research of infectious disease surveillance and modelling from a data science perspective, investigating the impact of global warming on disease outbreaks, and proposing innovations for building of One Health systems across Europe and the world. 

In the table below are listed all MOOD publications. Use the filter to select the most relevant articles.

58 entries « 1 of 3 »
58.

Faucher, Benjamin; Assab, Rania; Roux, Jonathan; Levy-Bruhl, Daniel; Kiem, Cécile Tran; Cauchemez, Simon; Zanetti, Laura; Colizza, Vittoria; Boëlle, Pierre-Yves; Poletto, Chiara

Agent-based modelling of reactive vaccination of workplaces and schools against COVID-19 Journal Article

In: Nature Communications, vol. 13, no. 1414, 2022.

Abstract | Links | BibTeX | Tags: COVID-19

57.

Valdano, Eugenio; Lee, Jonggul; Rubrichi, Stefania; Colizza, Vittoria

Mobility during the first week of the second lockdown in France Technical Report

2021.

Abstract | Links | BibTeX | Tags: COVID-19, France, lock-down, surveillance

56.

Pullano, Giulia; Domenico, Laura Di; Colizza, Vittoria

Telework and other measures reducing the presence at work to slow down COVID-19pdm in France (Sept 2020) Technical Report

2021.

Abstract | Links | BibTeX | Tags: COVID-19, epidemiology, France, measures

55.

Pullano, Giulia; Domenico, Laura Di; Sabbatini, Chiara E.; Colizza, Vittoria

Expected impact of exit strategies after the second lockdown - France, Nov 2020 Technical Report

2021.

Abstract | Links | BibTeX | Tags: COVID-19, France, lock-down, measures

54.

Kraemer, Moritz U. G.; Fraser, Oliver G. Pybusand; Cauchemez, Christophe; Rambaut, Simon; Cowling, Andrew; Benjamin, J.

Monitoring key epidemiological parameters of SARS-CoV-2 transmission Journal Article

In: Nature Medicine, vol. 27, no. 1854–1855 , pp. 1–2, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, epidemiology, transmission

53.

Faria, Nuno R.; Mellan, Thomas A.; Whittaker, Charles; Claro, Ingra M.; da S. Candido, Darlan; Mishra, Swapnil; Crispim, Myuki A. E.

Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil Journal Article

In: Science, vol. 372, no. 6544, pp. 815-821, 2021.

Abstract | Links | BibTeX | Tags: Brazil, COVID-19, epidemiology, phylogenetic

52.

Valentin, Sarah; Mercier, Alizé; Lancelot, Renaud; Roche, Mathieu; Arsevska, Elena

Monitoring online media reports for early detection of unknown diseases: Insight from a retrospective study of COVID-19 emergence Journal Article

In: Transboundary and Emerging Diseases, vol. 68, no. 3, pp. 981-986, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, disease x, EBS, infectious diseases, media extraction, monitoring

51.

Decoupes, Rémy; Rodrique, Kafando; Roche, Mathieu; Teisseire, Maguelonne

H-TFIDF: What makes areas specific over time in the massive flow of tweets related to the covid pandemic? Journal Article

In: AGILE: GIScience Series, vol. 2, no. 4, pp. 1-8, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, EBS, media extraction, Model, population dynamics, Public Health, Twitter

50.

Domenico, Laura Di; Sabbatini, Chiara E.; Pullano, Giulia; Lévy-Bruhl, Daniel; Colizza, Vittoria

Impact of lockdown on COVID-19 epidemic in Ile-de-France and possible exit strategies Journal Article

In: medRxiv, no. 2, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, epidemiology, Europe, Public Health

49.

Huang, Bo; Wang, Jionghua; Cai, Jixuan; Yao, Shiqi; Chan, Paul Kay Sheung; Tam, Tony Hong-wing; Hong, Ying-Yi; Ruktanonchai, Corrine W.; Carioli, Alessandra; Floyd, Jessica R.; Ruktanonchai, Nick W.; Yang, Weizhong; Li, Zhongjie; Tatem, Andrew J.; Lai, Shengjie

Integrated vaccination and physical distancing interventions to prevent future COVID-19 waves in Chinese cities Journal Article

In: Nature Human Behaviour, vol. 5, pp. 695–705, 2021.

Abstract | Links | BibTeX | Tags: China, COVID-19, epidemiology, vaccine

48.

Marini, Giovanni; Manica, Mattia; Delucchi, Luca; Pugliese, Andrea; Ros`a, Roberto

Spring temperature shapes West Nile virus transmission in Europe Journal Article

In: Acta Tropica, vol. 215, pp. 105796, 2021.

Abstract | Links | BibTeX | Tags: Animal disease surveillance, Climate, Environmental change, Italy, West Nile Virus

47.

Ingelbeen, Brecht; Peckeu, Laur`ene; Laga, Marie; Hendrix, Ilona; Neven, Inge; Sande, Marianne AB; Kleef, Esther

Reducing contacts to stop SARS-CoV-2 transmission during the second pandemic wave in Brussels, Belgium, August to November 2020 Journal Article

In: Eurosurveillance, vol. 26, no. 7, pp. 2100065, 2021.

Abstract | Links | BibTeX | Tags: Belgium, COVID-19, epidemiology, Model, school, transmission

46.

Valentin, Sarah; Lancelot, Renaud; Roche, Mathieu

Identifying associations between epidemiological entities in news data for animal disease surveillance Journal Article

In: Artificial Intelligence in Agriculture, vol. 5, pp. 163-174, 2021, ISSN: 2589-7217.

Abstract | Links | BibTeX | Tags: Animal disease surveillance, Event extraction, Text mining

45.

Li, Sabrina L; Messina, Jane P; Pybus, Oliver G; Kraemer, Moritz U G; Gardner, Lauren

A review of models applied to the geographic spread of Zika virus Journal Article

In: Transactions of The Royal Society of Tropical Medicine and Hygiene, vol. 115, no. 9, pp. 956-964, 2021, ISSN: 0035-9203.

Abstract | Links | BibTeX | Tags: Animal disease surveillance, Event extraction, Text mining, Zika

44.

Rodrique, Kafando; Decoupes, Rémy; Valentin, Sarah; Sautot, Lucile; Teisseire, Maguelonne; Roche, Mathieu

ITEXT-BIO: Intelligent Term EXTraction for BIOmedical analysis Journal Article

In: Health Information Science and Systems, vol. 9, 2021.

Abstract | Links | BibTeX | Tags: Biomedical terminology, Intelligent analysis, Terminology extraction

43.

Poletti, Piero; Tirani, Marcello; Cereda, Danilo; Trentini, Filippo; Guzzetta, Giorgio; Sabatino, Giuliana; Marziano, Valentina; Castrofino, Ambra; Grosso, Francesca; Castillo, Gabriele Del; others,

Association of age with likelihood of developing symptoms and critical disease among close contacts exposed to patients with confirmed sars-cov-2 infection in italy Journal Article

In: JAMA network open, vol. 4, no. 3, pp. e211085–e211085, 2021.

Links | BibTeX | Tags: Contact tracing, COVID-19, Italy

42.

Plessis, Louis; McCrone, John T.; Zarebski, Alexander E.; Hill, Verity; Ruis, Christopher; Gutierrez, Bernardo; Raghwani, Jayna; Ashworth, Jordan; Colquhoun, Rachel; Connor, Thomas R.; Faria, Nuno R.; Jackson, Ben; Loman, Nicholas J.; O’Toole, Áine; Nicholls, Samuel M.; Parag, Kris V.; Scher, Emily; Vasylyeva, Tetyana I.; Volz, Erik M.; Watts, Alexander; Bogoch, Isaac I.; Khan, Kamran; null,; Aanensen, David M.; Kraemer, Moritz U. G.; Rambaut, Andrew; Pybus, Oliver G.

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK Journal Article

In: Science, vol. 371, no. 6530, pp. 708-712, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, epidemiology, genome, phylogenetic, travel, United Kingdom

41.

Domenico, Laura Di; Pullano, Giulia; Sabbatini, Chiara E.; Bo""elle, Pierre-Yves; Colizza, Vittoria

Modelling safe protocols for reopening schools during the COVID-19 pandemic in France Journal Article

In: medRxiv, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, France, Model, school

40.

Valentin, Sarah; Mercier, Alizé; Lancelot, Renaud; Roche, Mathieu; Arsevska, Elena

Monitoring online media reports for early detection of unknown diseases: Insight from a retrospective study of COVID-19 emergence Journal Article

In: Transboundary and emerging diseases, vol. 68, no. 3, pp. 981–986, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, data mining, EBS, Event extraction, media extraction, monitoring, ProMed

39.

MacLean, Oscar A; Lytras, Spyros; Weaver, Steven; Singer, Joshua B; Boni, Maciej F; Lemey, Philippe; Pond, Sergei L Kosakovsky; Robertson, David L

Natural selection in the evolution of SARS-CoV-2 in bats created a generalist virus and highly capable human pathogen Journal Article

In: PLoS biology, vol. 19, no. 3, pp. e3001115, 2021.

Abstract | BibTeX | Tags: COVID-19, genome

58 entries « 1 of 3 »

Top-cited MOOD publications

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK
Plessis et al., 2020
Evolution and epidemic spread of SARS-CoV-2 in Brazil
Darlan et al., 2020
Preparedness and vulnerability of African countries against importations of COVID-19: a modelling study
Gilbert et al., 2020
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence
Moritz et al., 2020
Crowding and the shape of COVID-19 epidemics
Rader et al., 2020
Potential short-term outcome of an uncontrolled COVID-19 epidemic in Lombardy, Italy, February to March 2020
Guzzetta et al., 2020
Novel coronavirus (2019-nCoV) early-stage importation risk to Europe, January 2020
Pullano et al., 2020