MOOD publications

MOOD project is at the forefront of European research of infectious disease surveillance and modelling from a data science perspective, investigating the impact of global warming on disease outbreaks, and proposing innovations for building of One Health systems across Europe and the world. 

In the table below are listed all MOOD publications. Use the filter to select the most relevant articles.

108 entries « 1 of 6 »

Inward, Rhys P. D.; Jackson, Felix; Dasgupta, Abhishek; Lee, Graham; Battle, Anya Lindström; Parag, Kris V.; Kraemer, Moritz U. G.

Impact of spatiotemporal heterogeneity in COVID-19 disease surveillance on epidemiological parameters and case growth rates Journal Article

In: Epidemics, vol. 41, pp. 100627, 2023, ISSN: 1755-4365.

Abstract | Links | BibTeX | Tags: Epidemic models, Outbreak surveillance, SARS-CoV-2


Marini, Giovanni; Arnoldi, Daniele; Rizzoli, Annapaola; Tagliapietra, Valentina

Estimating rodent population abundance using early climatic predictors Journal Article

In: European Journal of Wildlife Research, vol. 69, no. 2, pp. 36, 2023.

Links | BibTeX | Tags: Apodemus flavicollis, Climate, early warning, Rodent density


Cataldo, Claudia; Masella, Roberta; Busani, Luca

Gender gap reduction and the one health benefits Author links open overlay panel Journal Article

In: One Health, vol. 16, pp. 100496, 2023, ISSN: 2352-7714.

Abstract | Links | BibTeX | Tags: eco health, education, empowerment, Gender gap, Gender-specific roles, One Health


Mulchandani, Ranya; Wang, Yu; Gilbert, Marius; Van Boeckel, Thomas P

Global trends in antimicrobial use in food-producing animals: 2020 to 2030 Journal Article

In: PLOS Global Public Health, vol. 3, no. 2, pp. e0001305, 2023.

Abstract | Links | BibTeX | Tags: antibiotics, Brazil, chicken, india, livestock, OpenDataSet, sheep, swine


Kyöttinen, Anniina

Vector-borne diseases stakeholder mapping in Finland - a one health approach Masters Thesis

Tampere University - Faculty of Social Sciences, 2023.

Abstract | Links | BibTeX | Tags: actor, ARDI- method, finland, multisectoral collaboration, One Health, stakeholder, Vector-borne disease


Valentin, Sarah; Arsevska, Elena; Mercier, Alizé; Falala, Sylvain; Rabatel, Julien; Lancelot, Renaud; Roche, Mathieu

PADI-web: An Event-Based Surveillance System for Detecting, Classifying and Processing Online News Conference

Human Language Technology. Challenges for Computer Science and Linguistics, vol. 12598, Springer International Publishing, 2022, ISBN: 978-3-030-66526-5.

Abstract | Links | BibTeX | Tags: animal health, classification, epidemic intelligence, information extraction, Text mining, web monitoring


Mencattelli, Giulia; Silverj, Andrea; Iapaolo, Federica; Ippoliti, Carla; Teodori, Liana; Di Gennaro, Annapia; Curini, Valentina; Candeloro, Luca; Conte, Annamaria; Polci, Andrea; Morelli, Daniela; Perrotta, Maria Gabriella; Marini, Giovanni; Rosà, Roberto; Monaco, Federica; Segata, Nicola; Rizzoli, Annapaola; Rota-Stabelli, Omar; Savini, Giovanni; Group, West Nile Working

Epidemiological and Evolutionary Analysis of West Nile Virus Lineage 2 in Italy Journal Article

In: Viruses, vol. 15, no. 35, 2022, ISSN: 1999-4915.

Abstract | Links | BibTeX | Tags: early-warning, epidemiology, evolution, Italy, West Nile virus lineage 2


Zardini, Agnese; Galli, Margherita; Tirani, Marcello; Cereda, Danilo; Manica, Mattia; Trentini, Filippo; Guzzetta, Giorgio; Marziano, Valentina; Piccarreta, Raffaella; Melegaro, Alessia; Ajelli, Marco; Poletti, Piero; Merler, Stefano

A quantitative assessment of epidemiological parameters required to investigate COVID-19 burden Journal Article

In: Epidemics, vol. 37, pp. 100530, 2022, ISSN: 1755-4365.

Abstract | Links | BibTeX | Tags: contact tracing data, disease burden, epidemiological parameters, risk outcomes, SARS-CoV-2


Marini, Giovanni; Pugliese, Andrea; Wint, William; Alexander, Neil S.; Rizzoli, Annapaola; Rosà, Roberto

Modelling the West Nile virus force of infection in the European human population Journal Article

In: One Health, vol. 15, pp. 100462, 2022, ISSN: 2352-7714.

Abstract | Links | BibTeX | Tags: Mathematical model, mosquitoes, Public Health, Vector-borne disease


Claudel, Iris; Brouazin, Ronan; Lancelot, Renaud; Gouagna, Louis-Clément; Dupraz, Marlène; Baldet, Thierry; Bouyer, Jérémy

Optimization of adult mosquito trap settings to monitor populations of Aedes and Culex mosquitoes, vectors of arboviruses in La Reunion Journal Article

In: Nature Communications, iss. 12, no. 19544, 2022.

Abstract | Links | BibTeX | Tags: Ecological epidemiology, Entomology


Brouazin, Ronan; Claudel, Iris; Lancelot, Renaud; Dupuy, Guillaume; Gouagna, Louis-Clément; Dupraz, Marlène; Baldet, Theirry; Bouyer, Jérémy

Optimization of oviposition trap settings to monitor populations of Aedes mosquitoes, vectors of arboviruses in La Reunion Journal Article

In: Nature Communications, iss. Sci Rep 12, no. 18450, 2022.

Abstract | Links | BibTeX | Tags: Animal behaviour, Ecology, Entomology, epidemiology


Monteiro, Joao; Martins, Bruno; Costa, Miguel; Pires, Joao

A Co-Training Approach for Spatial Data Disaggregation Book

Association for Computing Machinery, New York, NY, USA, 2022, ISBN: 9781450395298.

Abstract | Links | BibTeX | Tags: co-training, convolutional neural networks, dasymetric disaggregation, deep learning, encoder-decoder neural networks, geospatial data disaggregation, self-supervised learning


Cuypers, Lize; Dellicour, Simon; Hong, Samuel L.; Potter, Barney I.; Verhasselt, Bruno; Vereecke, Nick; Lambrechts, Laurens; Durkin, Keith; Bours, Vincent; Klamer, Sofieke; Bayon-Vicente, Guillaume; Vael, Carl; Ariën, Kevin K.; De Mendonca, Ricardo; Soetens, Oriane; Michel, Charlotte; Bearzatto, Bertrand; Naesens, Reinout; Gras, Jeremie; Vankeerberghen, Anne; Matheeussen, Veerle; Martens, Geert; Obbels, Dagmar; Lemmens, Ann; Van den Poel, Bea; Van Even, Ellen; De Rauw, Klara; Waumans, Luc; Reynders, Marijke; Degosserie, Jonathan; Maes, Piet; André, Emmanuel; Baele, Guy

Two Years of Genomic Surveillance in Belgium during the SARS-CoV-2 Pandemic to Attain Country-Wide Coverage and Monitor the Introduction and Spread of Emerging Variants Journal Article

In: Viruses, vol. 14, no. 10, pp. 2301, 2022, ISSN: 1999-4915.

Abstract | Links | BibTeX | Tags: Belgium, COVID-19, genomic surveillance, next-generation sequencing, SARS-CoV-2, variants of concern


Liana E. Kafetzopoulou Raphaëlle Klitting, Wim Thiery

Predicting the evolution of the Lassa virus endemic area and population at risk over the next decades Journal Article

In: Nature Communications, vol. 13, no. 5596, 2022.

Abstract | Links | BibTeX | Tags: Ecological modelling, phylogenetics, Viral genetics


Zeller, Mark; Gangavarapu, Karthik; Anderson, Catelyn; Smither, Allison R.; Vanchiere, John A.; Rose, Rebecca; Snyder, Daniel J.; Dudas, Gytis; Watts, Alexander; Matteson, Nathaniel L.; Robles-Sikisaka, Refugio; Marshall, Maximilian; Feehan, Amy K.; Sabino-Santos, Gilberto; Bell-Kareem, Antoinette R.; Hughes, Laura D.; Alkuzweny, Manar; Snarski, Patricia; Garcia-Diaz, Julia; Scott, Rona S.; Melnik, Lilia I.; Klitting, Raphaëlle; McGraw, Michelle; Belda-Ferre, Pedro; DeHoff, Peter; Sathe, Shashank; Marotz, Clarisse; Grubaugh, Nathan D.; Nolan, David J.; Drouin, Arnaud C.; Genemaras, Kaylynn J.; Chao, Karissa; Topol, Sarah; Spencer, Emily; Nicholson, Laura; Aigner, Stefan; Yeo, Gene W.; Farnaes, Lauge; Hobbs, Charlotte A.; Laurent, Louise C.; Knight, Rob; Hodcroft, Emma B.; Khan, Kamran; Fusco, Dahlene N.; Cooper, Vaughn S.; Lemey, Phillipe; Gardner, Lauren; Lamers, Susanna L.; Kamil, Jeremy P.; Garry, Robert F.; Suchard, Marc A.; Andersen, Kristian G.

Emergence of an early SARS-CoV-2 epidemic in the United States Journal Article

In: Cell, vol. 184, iss. 19, pp. 4939-4952.e15, 2022, ISSN: 0092-8674.

Abstract | Links | BibTeX | Tags: genomic epidemiology, mobility, phylogenetics, SARS-CoV-2, viral emergence, viral sequencing


Nahata, Kanika D; Bielejec, Filip; Monetta, Juan; Dellicour, Simon; Rambaut, Andrew; Suchard, Marc A; Baele, Guy; Lemey, Philippe

SPREAD 4: online visualisation of pathogen phylogeographic reconstructions Journal Article

In: Virus Evolution, vol. 8, no. 2, 2022, ISBN: 2057-1577, (veac088).

Abstract | Links | BibTeX | Tags: Bayesian inference, BEAST, phylogeography, viral spread, visualisation


Suvanto, Maija T; Uusitalo, Ruut; Otte im Kampe, Eveline; Vuorinen, Tytti; Kurkela, Satu; Vapalahti, Olli; Dub, Timothée; Huhtamo, Eili; Korhonen, Essi M

Sindbis virus outbreak and evidence for geographical expansion in Finland, 2021 Journal Article

In: Eurosurveillance, vol. 27, no. 31, 2022.

Abstract | Links | BibTeX | Tags: finland, infectious diseases, Pogosta disease, Sindbis virus


Schaeffer, Camille; Interdonato, Roberto; Lancelot, Renaud; Roche, Mathieu; Teisseire, Maguelonne

Labeled entities from social media data related to avian influenza disease Journal Article Forthcoming

In: Data in Brief, vol. 43, pp. 108317, Forthcoming, ISSN: 2352-3409.

Abstract | Links | BibTeX | Tags: avian influenza, epidemiology, named entity recognition, OpenDataSet, social networks, Text mining


Arınık, Nejat; Interdonato, Roberto; Roche, Mathieu; Teisseire, Maguelonne.

Inferring the transmission dynamics of Avian Influenza from news and environmental data Conference Forthcoming

NetSci (Network Science Society) , Forthcoming.

BibTeX | Tags:


Bernard, Celia; Holzmuller, Philippe; Bah, Madiou Thierno; Bastien, Matthieu; Combes, Benoit; Jori, Ferran; Grosbois, Vladimir; Vial, Laurence

Systematic Review on Crimean–Congo Hemorrhagic Fever Enzootic Cycle and Factors Favoring Virus Transmission: Special Focus on France, an Apparently Free-Disease Area in Europe Journal Article

In: Frontiers in Veterinary Science, pp. 973, 2022.

Abstract | Links | BibTeX | Tags: CCHF, France, hyalomma tick vectors, ticks, vector

108 entries « 1 of 6 »

Top-cited MOOD publications

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK
Plessis et al., 2020
Evolution and epidemic spread of SARS-CoV-2 in Brazil
Darlan et al., 2020
Preparedness and vulnerability of African countries against importations of COVID-19: a modelling study
Gilbert et al., 2020
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence
Moritz et al., 2020
Crowding and the shape of COVID-19 epidemics
Rader et al., 2020
Potential short-term outcome of an uncontrolled COVID-19 epidemic in Lombardy, Italy, February to March 2020
Guzzetta et al., 2020
Novel coronavirus (2019-nCoV) early-stage importation risk to Europe, January 2020
Pullano et al., 2020