MOOD publications

MOOD project is at the forefront of European research of infectious disease surveillance and modelling from a data science perspective, investigating the impact of global warming on disease outbreaks, and proposing innovations for building of One Health systems across Europe and the world. 

In the table below are listed all MOOD publications. Use the filter to select the most relevant articles.

88 entries « 1 of 5 »
88.

Valentin, Sarah; Arsevska, Elena; Mercier, Alizé; Falala, Sylvain; Rabatel, Julien; Lancelot, Renaud; Roche, Mathieu

PADI-web: An Event-Based Surveillance System for Detecting, Classifying and Processing Online News Conference

Human Language Technology. Challenges for Computer Science and Linguistics, vol. 12598, Springer International Publishing, 2022, ISBN: 978-3-030-66526-5.

Abstract | Links | BibTeX | Tags: animal health, classification, epidemic intelligence, information extraction, Text mining, web monitoring

87.

Zardini, Agnese; Galli, Margherita; Tirani, Marcello; Cereda, Danilo; Manica, Mattia; Trentini, Filippo; Guzzetta, Giorgio; Marziano, Valentina; Piccarreta, Raffaella; Melegaro, Alessia; Ajelli, Marco; Poletti, Piero; Merler, Stefano

A quantitative assessment of epidemiological parameters required to investigate COVID-19 burden Journal Article

In: Epidemics, vol. 37, pp. 100530, 2022, ISSN: 1755-4365.

Abstract | Links | BibTeX | Tags: contact tracing data, disease burden, epidemiological parameters, risk outcomes, SARS-CoV-2

86.

Claudel, Iris; Brouazin, Ronan; Lancelot, Renaud; Gouagna, Louis-Clément; Dupraz, Marlène; Baldet, Thierry; Bouyer, Jérémy

Optimization of adult mosquito trap settings to monitor populations of Aedes and Culex mosquitoes, vectors of arboviruses in La Reunion Journal Article

In: Nature Communications, iss. 12, no. 19544, 2022.

Abstract | Links | BibTeX | Tags: Ecological epidemiology, Entomology

85.

Brouazin, Ronan; Claudel, Iris; Lancelot, Renaud; Dupuy, Guillaume; Gouagna, Louis-Clément; Dupraz, Marlène; Baldet, Theirry; Bouyer, Jérémy

Optimization of oviposition trap settings to monitor populations of Aedes mosquitoes, vectors of arboviruses in La Reunion Journal Article

In: Nature Communications, iss. Sci Rep 12, no. 18450, 2022.

Abstract | Links | BibTeX | Tags: Animal behaviour, Ecology, Entomology, epidemiology

84.

Zeller, Mark; Gangavarapu, Karthik; Anderson, Catelyn; Smither, Allison R.; Vanchiere, John A.; Rose, Rebecca; Snyder, Daniel J.; Dudas, Gytis; Watts, Alexander; Matteson, Nathaniel L.; Robles-Sikisaka, Refugio; Marshall, Maximilian; Feehan, Amy K.; Sabino-Santos, Gilberto; Bell-Kareem, Antoinette R.; Hughes, Laura D.; Alkuzweny, Manar; Snarski, Patricia; Garcia-Diaz, Julia; Scott, Rona S.; Melnik, Lilia I.; Klitting, Raphaëlle; McGraw, Michelle; Belda-Ferre, Pedro; DeHoff, Peter; Sathe, Shashank; Marotz, Clarisse; Grubaugh, Nathan D.; Nolan, David J.; Drouin, Arnaud C.; Genemaras, Kaylynn J.; Chao, Karissa; Topol, Sarah; Spencer, Emily; Nicholson, Laura; Aigner, Stefan; Yeo, Gene W.; Farnaes, Lauge; Hobbs, Charlotte A.; Laurent, Louise C.; Knight, Rob; Hodcroft, Emma B.; Khan, Kamran; Fusco, Dahlene N.; Cooper, Vaughn S.; Lemey, Phillipe; Gardner, Lauren; Lamers, Susanna L.; Kamil, Jeremy P.; Garry, Robert F.; Suchard, Marc A.; Andersen, Kristian G.

Emergence of an early SARS-CoV-2 epidemic in the United States Journal Article

In: Cell, vol. 184, iss. 19, pp. 4939-4952.e15, 2022, ISSN: 0092-8674.

Abstract | Links | BibTeX | Tags: genomic epidemiology, mobility, phylogenetics, SARS-CoV-2, viral emergence, viral sequencing

83.

Suvanto, Maija T; Uusitalo, Ruut; Otte im Kampe, Eveline; Vuorinen, Tytti; Kurkela, Satu; Vapalahti, Olli; Dub, Timothée; Huhtamo, Eili; Korhonen, Essi M

Sindbis virus outbreak and evidence for geographical expansion in Finland, 2021 Journal Article

In: Eurosurveillance, vol. 27, no. 31, 2022.

Abstract | Links | BibTeX | Tags: finland, infectious diseases, Pogosta disease, Sindbis virus

82.

Schaeffer, Camille; Interdonato, Roberto; Lancelot, Renaud; Roche, Mathieu; Teisseire, Maguelonne

Labeled entities from social media data related to avian influenza disease Journal Article Forthcoming

In: Data in Brief, vol. 43, pp. 108317, Forthcoming, ISSN: 2352-3409.

Abstract | Links | BibTeX | Tags: avian influenza, epidemiology, named entity recognition, social networks, Text mining

81.

Arınık, Nejat; Interdonato, Roberto; Roche, Mathieu; Teisseire, Maguelonne.

Inferring the transmission dynamics of Avian Influenza from news and environmental data Conference Forthcoming

NetSci (Network Science Society) , Forthcoming.

BibTeX | Tags:

80.

Bernard, Celia; Holzmuller, Philippe; Bah, Madiou Thierno; Bastien, Matthieu; Combes, Benoit; Jori, Ferran; Grosbois, Vladimir; Vial, Laurence

Systematic Review on Crimean–Congo Hemorrhagic Fever Enzootic Cycle and Factors Favoring Virus Transmission: Special Focus on France, an Apparently Free-Disease Area in Europe Journal Article

In: Frontiers in Veterinary Science, pp. 973, 2022.

Abstract | Links | BibTeX | Tags: CCHF, France, hyalomma tick vectors, ticks, vector

79.

Contreras, Diego Andrés; Colosi, Elisabetta; Bassignana, Giulia; Colizza, Vittoria; Barrat, Alain

Impact of contact data resolution on the evaluation of interventions in mathematical models of infectious diseases Journal Article

In: Journal of the Royal Society Interface, vol. 19, no. 191, pp. 20220164, 2022.

Abstract | Links | BibTeX | Tags: Computational models, COVID-19, infectious diseases

78.

Menya, Edmond; Roche, Mathieu; Interdonato, Roberto; Owuor, Dickson

Enriching Epidemiological Thematic Features For Disease Surveillance Corpora Classification Conference

roceedings of the International Conference on Language Resources and Evaluation, LREC, 2022.

BibTeX | Tags:

77.

Syed, Mehtab Alam; Arsevska, Elena; Roche, Mathieu; Teisseire, Maguelonne

GeoXTag: Relative Spatial Information Extraction and Tagging of Unstructured Text Conference

Proceedings of the 25th AGILE Conference on Geographic Information Science, vol. 3, Copernicus Publications, 2022.

Abstract | Links | BibTeX | Tags: GeoParser, GeoTagger, natural language processing, spatial information

76.

Agoti, Charles N; Ochola-Oyier, Lynette Isabella; Dellicour, Simon; Mohammed, Khadija Said; Lambisia, Arnold W; de Laurent, Zaydah R; Morobe, John M; Mburu, Maureen W; Omuoyo, Donwilliams O; Ongera, Edidah M; Ndwiga, Leonard; Maitha, Eric; Kitole, Benson; Suleiman, Thani; Mwakinangu, Mohamed; Nyambu, John K; Otieno, John; Salim, Barke; Musyoki, Jennifer; Murunga, Nickson; Otieno, Edward; Kiiru, John N; Kasera, Kadondi; Amoth, Patrick; Mwangangi, Mercy; Aman, Rashid; Kinyanjui, Samson; Warimwe, George; Phan, My; Agweyu, Ambrose; Cotten, Matthew; Barasa, Edwine; Tsofa, Benjamin; Nokes, D James; Bejon, Philip; Githinji, George

Transmission networks of SARS-CoV-2 in Coastal Kenya during the first two waves: A retrospective genomic study Journal Article

In: eLife, vol. 11, pp. e71703, 2022, ISSN: 2050-084X.

Abstract | Links | BibTeX | Tags: Africa, COVID-19, epidemiology, genome, transmission

75.

Wongnak, Phrutsamon; Bord, Séverine; Jacquot, Maude; Agoulon, Albert; Beugnet, Frédéric; Bournez, Laure; Cèbe, Nicolas; Chevalier, Adélie; Cosson, Jean-François; Dambrine, Naïma; Hoch, Thierry; Huard, Frédéric; Korboulewsky, Nathalie; Lebert, Isabelle; Madouasse, Aurélien; Mårell, Anders; Moutailler, Sara; Plantard, Olivier; Pollet, Thomas; Poux, Valérie; René-Martellet, Magalie; Vayssier-Taussat, Muriel; Verheyden, Hélène; Vourc’h, Gwenaël; Chalvet-Monfray, Karine

Meteorological and climatic variables predict the phenology of Ixodes ricinus nymph activity in France, accounting for habitat heterogeneity. Journal Article

In: Nature Scientific Reports, vol. 7833, iss. 12, 2022.

Abstract | Links | BibTeX | Tags: Climate, climate change, disease ecology, France, infectious diseases, ixodes, ticks, vector

74.

Alam, Syed Mehtab; Arsevska, Elena; Roche, Mathieu; Teisseire, Maguelonne

A Data-Driven Score Model to Assess Online News Articles in Event-Based Surveillance System Conference

Information Management and Big Data, vol. 1577, Springer International Publishing, 2022.

Abstract | BibTeX | Tags: data quality, natural language processing, Text mining

73.

Colosi, Elisabetta; Bassignana, Giulia; Contreras, Diego Andrés; Poirier, Canelle; Boëlle, Pierre-Yves; Cauchemez, Simon; Yazdanpanah, Yazdan; Lina, Bruno; Fontanet, Arnaud; Barrat, Alain; others,

Screening and vaccination against COVID-19 to minimise school closure: a modelling study Journal Article

In: The Lancet Infectious Diseases, vol. 2, iss. 7, pp. Pages 977-989, 2022.

Links | BibTeX | Tags:

72.

Valentin, Sarah; Lancelot, Renaud; Roche, Mathieu

Fusion of spatiotemporal and thematic features of textual data for animal disease surveillance Journal Article

In: Information Processing in Agriculture, 2022, ISSN: 2214-3173.

Abstract | Links | BibTeX | Tags: Animal disease surveillance, fusion, ranking, Text mining

71.

Faucher, Benjamin; Assab, Rania; Roux, Jonathan; Levy-Bruhl, Daniel; Kiem, Cécile Tran; Cauchemez, Simon; Zanetti, Laura; Colizza, Vittoria; Boëlle, Pierre-Yves; Poletto, Chiara

Agent-based modelling of reactive vaccination of workplaces and schools against COVID-19 Journal Article

In: Nature Communications, vol. 13, no. 1414, 2022.

Abstract | Links | BibTeX | Tags: COVID-19

70.

Bianco, Luca; Moser, Mirko; Silverj, Andrea; Micheletti, Diego; Lorenzin, Giovanni; Collini, Lucia; Barbareschi, Mattia; Lanzafame, Paolo; Segata, Nicola; Pindo, Massimo; Franceschi, Pietro; Rota-Stabelli, Omar; Rizzoli, Annapaola; Fontana, Paolo; Donati, Claudio

On the Origin and Propagation of the COVID-19 Outbreak in the Italian Province of Trento, a Tourist Region of Northern Italy Journal Article

In: Viruses, vol. 14, iss. 3, no. 580, 2022, ISSN: 1999-4915.

Abstract | Links | BibTeX | Tags: COVID-19, genome, SARS-CoV-2, transmission

69.

Blokker, Tim; Baele, Guy; Lemey, Philippe; Dellicour, Simon

Phycova — a tool for exploring covariates of pathogen spread Journal Article

In: Virus Evolution, vol. 8, iss. 1, 2022, ISSN: 2057-1577, (veac015).

Abstract | Links | BibTeX | Tags: BEAST, covariates, discrete phylogeography, generalized linear model, linear regression, pathogen spread, PhyCovA, visualization

88 entries « 1 of 5 »

Top-cited MOOD publications

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK
Plessis et al., 2020
Evolution and epidemic spread of SARS-CoV-2 in Brazil
Darlan et al., 2020
Preparedness and vulnerability of African countries against importations of COVID-19: a modelling study
Gilbert et al., 2020
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence
Moritz et al., 2020
Crowding and the shape of COVID-19 epidemics
Rader et al., 2020
Potential short-term outcome of an uncontrolled COVID-19 epidemic in Lombardy, Italy, February to March 2020
Guzzetta et al., 2020
Novel coronavirus (2019-nCoV) early-stage importation risk to Europe, January 2020
Pullano et al., 2020