MOOD project is at the forefront of European research of infectious disease surveillance and modelling from a data science perspective, investigating the impact of global warming on disease outbreaks, and proposing innovations for building of One Health systems across Europe and the world.
In the table below are listed all MOOD publications. Use the filter to select the most relevant articles.
Valentin, Sarah; Mercier, Alizé; Lancelot, Renaud; Roche, Mathieu; Arsevska, Elena
Monitoring online media reports for early detection of unknown diseases: Insight from a retrospective study of COVID-19 emergence Journal Article
In: Transboundary and Emerging Diseases, vol. 68, no. 3, pp. 981-986, 2021.
Abstract | Links | BibTeX | Tags: COVID-19, disease x, EBS, infectious diseases, media extraction, monitoring
@article{nokey,
title = {Monitoring online media reports for early detection of unknown diseases: Insight from a retrospective study of COVID-19 emergence},
author = {Sarah Valentin and Alizé Mercier and Renaud Lancelot and Mathieu Roche and Elena Arsevska},
url = {https://onlinelibrary.wiley.com/doi/10.1111/tbed.13738},
doi = {https://doi.org/10.1111/tbed.13738},
year = {2021},
date = {2021-07-19},
journal = {Transboundary and Emerging Diseases},
volume = {68},
number = {3},
pages = {981-986},
abstract = {Event-based surveillance (EBS) systems monitor a broad range of information sources to detect early signals of disease emergence, including new and unknown diseases. In December 2019, a newly identified coronavirus emerged in Wuhan (China), causing a global coronavirus disease (COVID-19) pandemic. A retrospective study was conducted to evaluate the capacity of three event-based surveillance (EBS) systems (ProMED, HealthMap and PADI-web) to detect early COVID-19 emergence signals. We focused on changes in online news vocabulary over the period before/after the identification of COVID-19, while also assessing its contagiousness and pandemic potential. ProMED was the timeliest EBS, detecting signals one day before the official notification. At this early stage, the specific vocabulary used was related to ‘pneumonia symptoms’ and ‘mystery illness’. Once COVID-19 was identified, the vocabulary changed to virus family and specific COVID-19 acronyms. Our results suggest that the three EBS systems are complementary regarding data sources, and all require timeliness improvements. EBS methods should be adapted to the different stages of disease emergence to enhance early detection of future unknown disease outbreaks.},
keywords = {COVID-19, disease x, EBS, infectious diseases, media extraction, monitoring},
pubstate = {published},
tppubtype = {article}
}
Valentin, Sarah; Mercier, Alizé; Lancelot, Renaud; Roche, Mathieu; Arsevska, Elena
Monitoring online media reports for early detection of unknown diseases: Insight from a retrospective study of COVID-19 emergence Journal Article
In: Transboundary and emerging diseases, vol. 68, no. 3, pp. 981–986, 2021.
Abstract | Links | BibTeX | Tags: COVID-19, data mining, EBS, Event extraction, media extraction, monitoring, ProMed
@article{valentin2021monitoring,
title = {Monitoring online media reports for early detection of unknown diseases: Insight from a retrospective study of COVID-19 emergence},
author = {Sarah Valentin and Alizé Mercier and Renaud Lancelot and Mathieu Roche and Elena Arsevska},
doi = {https://doi.org/10.1111/tbed.13738},
year = {2021},
date = {2021-01-01},
urldate = {2021-01-01},
journal = {Transboundary and emerging diseases},
volume = {68},
number = {3},
pages = {981--986},
publisher = {Wiley Online Library},
abstract = {Event-based surveillance (EBS) systems monitor a broad range of information sources to detect early signals of disease emergence, including new and unknown diseases. In December 2019, a newly identified coronavirus emerged in Wuhan (China), causing a global coronavirus disease (COVID-19) pandemic. A retrospective study was conducted to evaluate the capacity of three event-based surveillance (EBS) systems (ProMED, HealthMap and PADI-web) to detect early COVID-19 emergence signals. We focused on changes in online news vocabulary over the period before/after the identification of COVID-19, while also assessing its contagiousness and pandemic potential. ProMED was the timeliest EBS, detecting signals one day before the official notification. At this early stage, the specific vocabulary used was related to ‘pneumonia symptoms’ and ‘mystery illness’. Once COVID-19 was identified, the vocabulary changed to virus family and specific COVID-19 acronyms. Our results suggest that the three EBS systems are complementary regarding data sources, and all require timeliness improvements. EBS methods should be adapted to the different stages of disease emergence to enhance early detection of future unknown disease outbreaks.},
keywords = {COVID-19, data mining, EBS, Event extraction, media extraction, monitoring, ProMed},
pubstate = {published},
tppubtype = {article}
}
Valentin, Sarah; Lancelot, Renaud; Roche, Mathieu
Äutomated Processing of Multilingual Online News for the Monitoring of Animal Infectious Diseases" Inproceedings
In: Proceedings of the LREC 2020 Workshop on Multilingual Biomedical Text Processing (MultilingualBIO 2020), pp. 33–36, European Language Resources Association, Marseille, France, 2020, ISBN: 979-10-95546-65-8.
Abstract | Links | BibTeX | Tags: Animal disease surveillance, detection, monitoring, Text mining
@inproceedings{valentin-etal-2020-automated,
title = {Äutomated Processing of Multilingual Online News for the Monitoring of Animal Infectious Diseases"},
author = {Sarah Valentin and Renaud Lancelot and Mathieu Roche},
url = {https://aclanthology.org/2020.multilingualbio-1.6},
isbn = {979-10-95546-65-8},
year = {2020},
date = {2020-05-01},
booktitle = {Proceedings of the LREC 2020 Workshop on Multilingual Biomedical Text Processing (MultilingualBIO 2020)},
pages = {33--36},
publisher = {European Language Resources Association},
address = {Marseille, France},
abstract = {The Platform for Automated extraction of animal Disease Information from the web (PADI-web) is an automated system which monitors the web for monitoring and detecting emerging animal infectious diseases. The tool automatically collects news via customised multilingual queries, classifies them and extracts epidemiological information. We detail the processing of multilingual online sources by PADI-web and analyse the translated outputs in a case study},
keywords = {Animal disease surveillance, detection, monitoring, Text mining},
pubstate = {published},
tppubtype = {inproceedings}
}