MOOD publications

MOOD project is at the forefront of European research of infectious disease surveillance and modelling from a data science perspective, investigating the impact of global warming on disease outbreaks, and proposing innovations for building of One Health systems across Europe and the world. 

In the table below are listed all MOOD publications. Use the filter to select the most relevant articles.

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26 entries « 1 of 2 »
26.

Mencattelli, Giulia; Silverj, Andrea; Iapaolo, Federica; Ippoliti, Carla; Teodori, Liana; Di Gennaro, Annapia; Curini, Valentina; Candeloro, Luca; Conte, Annamaria; Polci, Andrea; Morelli, Daniela; Perrotta, Maria Gabriella; Marini, Giovanni; Rosà, Roberto; Monaco, Federica; Segata, Nicola; Rizzoli, Annapaola; Rota-Stabelli, Omar; Savini, Giovanni; Group, West Nile Working

Epidemiological and Evolutionary Analysis of West Nile Virus Lineage 2 in Italy Journal Article

In: Viruses, vol. 15, no. 35, 2022, ISSN: 1999-4915.

Abstract | Links | BibTeX | Tags: early-warning, epidemiology, evolution, Italy, West Nile virus lineage 2

25.

Brouazin, Ronan; Claudel, Iris; Lancelot, Renaud; Dupuy, Guillaume; Gouagna, Louis-Clément; Dupraz, Marlène; Baldet, Theirry; Bouyer, Jérémy

Optimization of oviposition trap settings to monitor populations of Aedes mosquitoes, vectors of arboviruses in La Reunion Journal Article

In: Nature Communications, iss. Sci Rep 12, no. 18450, 2022.

Abstract | Links | BibTeX | Tags: Animal behaviour, Ecology, Entomology, epidemiology

24.

Schaeffer, Camille; Interdonato, Roberto; Lancelot, Renaud; Roche, Mathieu; Teisseire, Maguelonne

Labeled entities from social media data related to avian influenza disease Journal Article Forthcoming

In: Data in Brief, vol. 43, pp. 108317, Forthcoming, ISSN: 2352-3409.

Abstract | Links | BibTeX | Tags: avian influenza, epidemiology, named entity recognition, OpenDataSet, social networks, Text mining

23.

Agoti, Charles N; Ochola-Oyier, Lynette Isabella; Dellicour, Simon; Mohammed, Khadija Said; Lambisia, Arnold W; de Laurent, Zaydah R; Morobe, John M; Mburu, Maureen W; Omuoyo, Donwilliams O; Ongera, Edidah M; Ndwiga, Leonard; Maitha, Eric; Kitole, Benson; Suleiman, Thani; Mwakinangu, Mohamed; Nyambu, John K; Otieno, John; Salim, Barke; Musyoki, Jennifer; Murunga, Nickson; Otieno, Edward; Kiiru, John N; Kasera, Kadondi; Amoth, Patrick; Mwangangi, Mercy; Aman, Rashid; Kinyanjui, Samson; Warimwe, George; Phan, My; Agweyu, Ambrose; Cotten, Matthew; Barasa, Edwine; Tsofa, Benjamin; Nokes, D James; Bejon, Philip; Githinji, George

Transmission networks of SARS-CoV-2 in Coastal Kenya during the first two waves: A retrospective genomic study Journal Article

In: eLife, vol. 11, pp. e71703, 2022, ISSN: 2050-084X.

Abstract | Links | BibTeX | Tags: Africa, COVID-19, epidemiology, genome, transmission

22.

Yong; Zhang Ge, Wen-Bin; Wu

Untangling the changing impact of non-pharmaceutical interventions and vaccination on European COVID-19 trajectories Journal Article

In: Nature Commun, vol. 13, no. 3106, 2022.

Abstract | Links | BibTeX | Tags: Applied mathematics, epidemiology, infectious diseases

21.

Viana, Raquel; Moyo, Sikhulile; Amoako, Daniel G; Tegally, Houriiyah; Scheepers, Cathrine; Althaus, Christian L; Anyaneji, Ugochukwu J; Bester, Phillip A; Boni, Maciej F; Chand, Mohammed; others,

Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa Journal Article

In: Nature, vol. 603, no. 7902, pp. 679-686, 2022.

Abstract | Links | BibTeX | Tags: epidemiology, Molecular evolution, SARS-CoV-2

20.

Cereda, Danilo; Manica, Mattia; Tirani, Marcello; Rovida, Francesca; Demicheli, Vittorio; Ajelli, Marco; Poletti, Piero; Trentini, Filippo; Guzzetta, Giorgio; Marziano, Valentina; Piccarreta, Raffaella; Barone, Antonio; Magoni, Michele; Deandrea, Silvia; Diurno, Giulio; Lombardo, Massimo; Faccini, Marino; Pan, Angelo; Bruno, Raffaele; Pariani, Elena; Grasselli, Giacomo; Piatti, Alessandra; Gramegna, Maria; Baldanti, Fausto; Melegaro, Alessia; Merler, Stefano

The early phase of the COVID-19 epidemic in Lombardy, Italy Journal Article

In: Epidemics, vol. 37, pp. 100528, 2021, ISSN: 1755-4365.

Abstract | Links | BibTeX | Tags: Coronavirus, COVID-19, epidemiology, Lombardy outbreak, reproduction number, SARS-CoV-2, Transmission dynamics

19.

Pullano, Giulia; Domenico, Laura Di; Colizza, Vittoria

Telework and other measures reducing the presence at work to slow down COVID-19pdm in France (Sept 2020) Technical Report

2021.

Abstract | Links | BibTeX | Tags: COVID-19, epidemiology, France, measures

18.

Kraemer, Moritz U. G.; Fraser, Oliver G. Pybusand; Cauchemez, Christophe; Rambaut, Simon; Cowling, Andrew; Benjamin, J.

Monitoring key epidemiological parameters of SARS-CoV-2 transmission Journal Article

In: Nature Medicine, vol. 27, no. 1854–1855 , pp. 1–2, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, epidemiology, transmission

17.

Faria, Nuno R.; Mellan, Thomas A.; Whittaker, Charles; Claro, Ingra M.; da S. Candido, Darlan; Mishra, Swapnil; Crispim, Myuki A. E.

Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil Journal Article

In: Science, vol. 372, no. 6544, pp. 815-821, 2021.

Abstract | Links | BibTeX | Tags: Brazil, COVID-19, epidemiology, OpenDataSet, phylogenetic

16.

Domenico, Laura Di; Sabbatini, Chiara E.; Pullano, Giulia; Lévy-Bruhl, Daniel; Colizza, Vittoria

Impact of January 2021 curfew measures on SARS-CoV-2 B.1.1.7 circulation in France Journal Article

In: Eurosurveillance, vol. 26, iss. 15, no. 2, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, epidemiology, Europe, Public Health

15.

Huang, Bo; Wang, Jionghua; Cai, Jixuan; Yao, Shiqi; Chan, Paul Kay Sheung; Tam, Tony Hong-wing; Hong, Ying-Yi; Ruktanonchai, Corrine W.; Carioli, Alessandra; Floyd, Jessica R.; Ruktanonchai, Nick W.; Yang, Weizhong; Li, Zhongjie; Tatem, Andrew J.; Lai, Shengjie

Integrated vaccination and physical distancing interventions to prevent future COVID-19 waves in Chinese cities Journal Article

In: Nature Human Behaviour, vol. 5, pp. 695–705, 2021.

Abstract | Links | BibTeX | Tags: China, COVID-19, epidemiology, OpenDataSet, vaccine

14.

Plessis, Louis; McCrone, John T.; Zarebski, Alexander E.; Hill, Verity; Ruis, Christopher; Gutierrez, Bernardo; Raghwani, Jayna; Ashworth, Jordan; Colquhoun, Rachel; Connor, Thomas R.; Faria, Nuno R.; Jackson, Ben; Loman, Nicholas J.; O’Toole, Áine; Nicholls, Samuel M.; Parag, Kris V.; Scher, Emily; Vasylyeva, Tetyana I.; Volz, Erik M.; Watts, Alexander; Bogoch, Isaac I.; Khan, Kamran; null,; Aanensen, David M.; Kraemer, Moritz U. G.; Rambaut, Andrew; Pybus, Oliver G.

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK Journal Article

In: Science, vol. 371, no. 6530, pp. 708-712, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, epidemiology, genome, OpenDataSet, phylogenetic, travel, United Kingdom

13.

Ingelbeen, Brecht; Peckeu, Laur`ene; Laga, Marie; Hendrix, Ilona; Neven, Inge; Sande, Marianne AB; Kleef, Esther

Reducing contacts to stop SARS-CoV-2 transmission during the second pandemic wave in Brussels, Belgium, August to November 2020 Journal Article

In: Eurosurveillance, vol. 26, no. 7, pp. 2100065, 2021.

Abstract | Links | BibTeX | Tags: Belgium, COVID-19, epidemiology, Model, school, transmission

12.

Oidtman, Rachel J; Omodei, Elisa; Kraemer, Moritz UG; Casteneda-Orjuela, Carlos A; Cruz-Rivera, Erica; Misnaza-Castrillon, Sandra; Cifuentes, Myriam Patricia; Rincon, Luz Emilse; Canon, Viviana; Alarcon, Pedro; others,

Trade-offs between individual and ensemble forecasts of an emerging infectious disease Journal Article

In: Nature Communications, vol. 12, no. 5379 , 2021.

Abstract | Links | BibTeX | Tags: epidemiology, infectious diseases, Model, Zika

11.

Pullano, Giulia; Domenico, Laura Di; Sabbatini, Chiara E; Valdano, Eugenio; Turbelin, Clément; Debin, Marion; Guerrisi, Caroline; Kengne-Kuetche, Charly; Souty, Cécile; Hanslik, Thomas; others,

Underdetection of cases of COVID-19 in France threatens epidemic control Journal Article

In: Nature, vol. 590, no. 7844, pp. 134–139, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, epidemiology, France, OpenDataSet, surveillance

10.

Lemey, Philippe; Ruktanonchai, Nick; Hong, Samuel L; Colizza, Vittoria; Poletto, Chiara; den Broeck, Frederik Van; Gill, Mandev S; Ji, Xiang; Levasseur, Anthony; Munnink, Bas B Oude; others,

Untangling introductions and persistence in COVID-19 resurgence in Europe Journal Article

In: Nature, vol. 595, no. 7869, pp. 713–717, 2021.

Abstract | Links | BibTeX | Tags: big data, COVID-19, epidemiology, Europe, measures, mobility

9.

Trentini, Filippo; Marziano, Valentina; Guzzetta, Giorgio; Tirani, Marcello; Cereda, Danilo; Poletti, Piero; Piccarreta, Raffaella; Barone, Antonio; Preziosi, Giuseppe; Arduini, Fabio; Valle, Petra Giulia Della; Zanella, Alberto; Grosso, Francesca; Castillo, Gabriele; Castrofino, Ambra; Grasselli, Giacomo; Melegaro, Alessia; Piatti, Alessandra; Andreassi, Aida; Gramegna, Maria; Ajelli, Marco; Merler, Stefano

The pressure on healthcare system and intensive care utilization during the COVID-19 outbreak in the Lombardy region: a retrospective observational study on 43,538 hospitalized patients Journal Article

In: American Journal of Epidemiology, 2021, ISSN: 0002-9262, (kwab252).

Abstract | Links | BibTeX | Tags: big data, COVID-19, epidemiology, ICU, Italy, Public Health

8.

Rader, Benjamin; Scarpino, Samuel V; Nande, Anjalika; Hill, Alison L; Adlam, Ben; Reiner, Robert C; Pigott, David M; Gutierrez, Bernardo; Zarebski, Alexander E; Shrestha, Munik; others,

Crowding and the shape of COVID-19 epidemics Journal Article

In: Nature medicine, vol. 26, no. 12, pp. 1829–1834, 2020.

Abstract | Links | BibTeX | Tags: COVID-19, epidemiology, OpenDataSet, population dynamics

7.

Lai, Shengjie; Ruktanonchai, Nick W; Zhou, Liangcai; Prosper, Olivia; Luo, Wei; Floyd, Jessica R; Wesolowski, Amy; Santillana, Mauricio; Zhang, Chi; Du, Xiangjun; others,

Effect of non-pharmaceutical interventions to contain COVID-19 in China Journal Article

In: nature, vol. 585, no. 7825, pp. 410–413, 2020.

Abstract | Links | BibTeX | Tags: COVID-19, epidemiology, health policy, Model

26 entries « 1 of 2 »

Top-cited MOOD publications

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK
Plessis et al., 2020
Evolution and epidemic spread of SARS-CoV-2 in Brazil
Darlan et al., 2020
Preparedness and vulnerability of African countries against importations of COVID-19: a modelling study
Gilbert et al., 2020
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence
Moritz et al., 2020
Crowding and the shape of COVID-19 epidemics
Rader et al., 2020
Potential short-term outcome of an uncontrolled COVID-19 epidemic in Lombardy, Italy, February to March 2020
Guzzetta et al., 2020
Novel coronavirus (2019-nCoV) early-stage importation risk to Europe, January 2020
Pullano et al., 2020