MOOD publications

MOOD project is at the forefront of European research of infectious disease surveillance and modelling from a data science perspective, investigating the impact of global warming on disease outbreaks, and proposing innovations for building of One Health systems across Europe and the world. 

In the table below are listed all MOOD publications. Use the filter to select the most relevant articles.

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55 entries « 1 of 3 »
55.

Cuypers, Lize; Dellicour, Simon; Hong, Samuel L.; Potter, Barney I.; Verhasselt, Bruno; Vereecke, Nick; Lambrechts, Laurens; Durkin, Keith; Bours, Vincent; Klamer, Sofieke; Bayon-Vicente, Guillaume; Vael, Carl; Ariën, Kevin K.; De Mendonca, Ricardo; Soetens, Oriane; Michel, Charlotte; Bearzatto, Bertrand; Naesens, Reinout; Gras, Jeremie; Vankeerberghen, Anne; Matheeussen, Veerle; Martens, Geert; Obbels, Dagmar; Lemmens, Ann; Van den Poel, Bea; Van Even, Ellen; De Rauw, Klara; Waumans, Luc; Reynders, Marijke; Degosserie, Jonathan; Maes, Piet; André, Emmanuel; Baele, Guy

Two Years of Genomic Surveillance in Belgium during the SARS-CoV-2 Pandemic to Attain Country-Wide Coverage and Monitor the Introduction and Spread of Emerging Variants Journal Article

In: Viruses, vol. 14, no. 10, pp. 2301, 2022, ISSN: 1999-4915.

Abstract | Links | BibTeX | Tags: Belgium, COVID-19, genomic surveillance, next-generation sequencing, SARS-CoV-2, variants of concern

54.

Contreras, Diego Andrés; Colosi, Elisabetta; Bassignana, Giulia; Colizza, Vittoria; Barrat, Alain

Impact of contact data resolution on the evaluation of interventions in mathematical models of infectious diseases Journal Article

In: Journal of the Royal Society Interface, vol. 19, no. 191, pp. 20220164, 2022.

Abstract | Links | BibTeX | Tags: Computational models, COVID-19, infectious diseases, OpenDataSet

53.

razo, Diana; Vincenti-Gonzalez, Maria F.; van Loenhout, Joris A. F.; Hubin, Pierre; Vandromme, Mathil; Maes, Piet; Taquet, Maxime; Van Weyenbergh, Johan; Catteau, Lucy; Dellicour, Simon

Investigating COVID-19 Vaccine Impact on the Risk of Hospitalisation through the Analysis of National Surveillance Data Collected in Belgium Journal Article

In: Viruses, vol. 14, no. 6, pp. 1315, 2022, ISSN: 1999-4915.

Abstract | Links | BibTeX | Tags: COVID-19, hospitalisation surveillance, risk ratio, SARS-CoV-2, vaccination impact

52.

Agoti, Charles N; Ochola-Oyier, Lynette Isabella; Dellicour, Simon; Mohammed, Khadija Said; Lambisia, Arnold W; de Laurent, Zaydah R; Morobe, John M; Mburu, Maureen W; Omuoyo, Donwilliams O; Ongera, Edidah M; Ndwiga, Leonard; Maitha, Eric; Kitole, Benson; Suleiman, Thani; Mwakinangu, Mohamed; Nyambu, John K; Otieno, John; Salim, Barke; Musyoki, Jennifer; Murunga, Nickson; Otieno, Edward; Kiiru, John N; Kasera, Kadondi; Amoth, Patrick; Mwangangi, Mercy; Aman, Rashid; Kinyanjui, Samson; Warimwe, George; Phan, My; Agweyu, Ambrose; Cotten, Matthew; Barasa, Edwine; Tsofa, Benjamin; Nokes, D James; Bejon, Philip; Githinji, George

Transmission networks of SARS-CoV-2 in Coastal Kenya during the first two waves: A retrospective genomic study Journal Article

In: eLife, vol. 11, pp. e71703, 2022, ISSN: 2050-084X.

Abstract | Links | BibTeX | Tags: Africa, COVID-19, epidemiology, genome, transmission

51.

Faucher, Benjamin; Assab, Rania; Roux, Jonathan; Levy-Bruhl, Daniel; Kiem, Cécile Tran; Cauchemez, Simon; Zanetti, Laura; Colizza, Vittoria; Boëlle, Pierre-Yves; Poletto, Chiara

Agent-based modelling of reactive vaccination of workplaces and schools against COVID-19 Journal Article

In: Nature Communications, vol. 13, no. 1414, 2022.

Abstract | Links | BibTeX | Tags: COVID-19

50.

Bianco, Luca; Moser, Mirko; Silverj, Andrea; Micheletti, Diego; Lorenzin, Giovanni; Collini, Lucia; Barbareschi, Mattia; Lanzafame, Paolo; Segata, Nicola; Pindo, Massimo; Franceschi, Pietro; Rota-Stabelli, Omar; Rizzoli, Annapaola; Fontana, Paolo; Donati, Claudio

On the Origin and Propagation of the COVID-19 Outbreak in the Italian Province of Trento, a Tourist Region of Northern Italy Journal Article

In: Viruses, vol. 14, iss. 3, no. 580, 2022, ISSN: 1999-4915.

Abstract | Links | BibTeX | Tags: COVID-19, genome, SARS-CoV-2, transmission

49.

Valentina; Guzzetta Marziano, Giorgio; Mammone

The effect of COVID-19 vaccination in Italy and perspectives for living with the virus Journal Article

In: vol. 12, no. 7272, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, vaccination

48.

Valdano, Eugenio; Lee, Jonggul; Rubrichi, Stefania; Colizza, Vittoria

Mobility during the first week of the second lockdown in France Technical Report

2021.

Abstract | Links | BibTeX | Tags: COVID-19, France, lock-down, surveillance

47.

Laura; E. Sabbatini Di Domenico, Chiara; Boëlle

Adherence and sustainability of interventions informing optimal control against the COVID-19 pandemic Journal Article

In: Nature Communications, vol. 1, no. 57, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, OpenDataSet

46.

Cereda, Danilo; Manica, Mattia; Tirani, Marcello; Rovida, Francesca; Demicheli, Vittorio; Ajelli, Marco; Poletti, Piero; Trentini, Filippo; Guzzetta, Giorgio; Marziano, Valentina; Piccarreta, Raffaella; Barone, Antonio; Magoni, Michele; Deandrea, Silvia; Diurno, Giulio; Lombardo, Massimo; Faccini, Marino; Pan, Angelo; Bruno, Raffaele; Pariani, Elena; Grasselli, Giacomo; Piatti, Alessandra; Gramegna, Maria; Baldanti, Fausto; Melegaro, Alessia; Merler, Stefano

The early phase of the COVID-19 epidemic in Lombardy, Italy Journal Article

In: Epidemics, vol. 37, pp. 100528, 2021, ISSN: 1755-4365.

Abstract | Links | BibTeX | Tags: Coronavirus, COVID-19, epidemiology, Lombardy outbreak, reproduction number, SARS-CoV-2, Transmission dynamics

45.

Pullano, Giulia; Domenico, Laura Di; Colizza, Vittoria

Telework and other measures reducing the presence at work to slow down COVID-19pdm in France (Sept 2020) Technical Report

2021.

Abstract | Links | BibTeX | Tags: COVID-19, epidemiology, France, measures

44.

Pullano, Giulia; Domenico, Laura Di; Sabbatini, Chiara E.; Colizza, Vittoria

Expected impact of exit strategies after the second lockdown - France, Nov 2020 Technical Report

2021.

Abstract | Links | BibTeX | Tags: COVID-19, France, lock-down, measures

43.

Kraemer, Moritz U. G.; Fraser, Oliver G. Pybusand; Cauchemez, Christophe; Rambaut, Simon; Cowling, Andrew; Benjamin, J.

Monitoring key epidemiological parameters of SARS-CoV-2 transmission Journal Article

In: Nature Medicine, vol. 27, no. 1854–1855 , pp. 1–2, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, epidemiology, transmission

42.

Syed, Mehtab Alam; Decoupes, Rémy; Arsevska, Elena; Roche, Mathieu; Teisseire, Maguelonne

Spatial opinion mining from COVID-19 twitter data Journal Article

In: International Journal of Infectious Diseases, vol. 116, iss. 549, pp. 527, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, public opinion, social networks, Text mining

41.

Faria, Nuno R.; Mellan, Thomas A.; Whittaker, Charles; Claro, Ingra M.; da S. Candido, Darlan; Mishra, Swapnil; Crispim, Myuki A. E.

Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil Journal Article

In: Science, vol. 372, no. 6544, pp. 815-821, 2021.

Abstract | Links | BibTeX | Tags: Brazil, COVID-19, epidemiology, OpenDataSet, phylogenetic

40.

Hu, Maogui; Wang, Jinfeng; Lin, Hui; Ruktanonchai, Corrine W; Xu, Chengdong; Meng, Bin; Zhang, Xin; Carioli, Alessandra; Feng, Yuqing; Yin, Qian; Floyd, Jessica R; Ruktanonchai, Nick W; Li, Zhongjie; Yang, Weizhong; Tatem, Andrew J; Lai, Shengjie

Risk of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Transmission Among Air Passengers in China Journal Article

In: Clinical Infectious Diseases, vol. 75, iss. 1, pp. e234–e240, 2021, ISSN: 1058-4838.

Abstract | Links | BibTeX | Tags: airplanes, attack rate, COVID-19, SARS-CoV-2, transmission

39.

Manica, Mattia; Pancheri, Serena; Poletti, Piero; Giovanazzi, Giulia; Guzzetta, Giorgio; Trentini, Filippo; Marziano, Valentina; Ajelli, Marco; Grazia Zuccali, Maria; Benetollo, Pier Paolo; Merler, Stefano; Ferro, Antonio

Risk of Symptomatic Infection During a Second Coronavirus Disease 2019 Wave in Severe Acute Respiratory Syndrome Coronavirus 2–Seropositive Individuals Journal Article

In: Clinical Infectious Diseases, vol. 74, no. 5, pp. 893-896, 2021, ISSN: 1058-4838.

Abstract | Links | BibTeX | Tags: COVID-19, naturak immunity, reinfection risk, SARS-CoV-2, serological screening

38.

Catherine Linard Simon Dellicour, Nina Van Goethem

Investigating the drivers of the spatio-temporal heterogeneity in COVID-19 hospital incidence—Belgium as a study case Journal Article

In: International Journal of Health Geographics, iss. 20, no. 29, 2021, ISSN: 1476-072X.

Abstract | Links | BibTeX | Tags: Belgium, Boosted regression trees, COVID-19, Hospitalisation incidence, Spatial covariates, Temporal covariates

37.

Decoupes, Rémy; Rodrique, Kafando; Roche, Mathieu; Teisseire, Maguelonne

H-TFIDF: What makes areas specific over time in the massive flow of tweets related to the covid pandemic? Journal Article

In: AGILE: GIScience Series, vol. 2, no. 4, pp. 1-8, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, EBS, media extraction, Model, population dynamics, Public Health, Twitter

36.

Domenico, Laura Di; Sabbatini, Chiara E.; Pullano, Giulia; Lévy-Bruhl, Daniel; Colizza, Vittoria

Impact of January 2021 curfew measures on SARS-CoV-2 B.1.1.7 circulation in France Journal Article

In: Eurosurveillance, vol. 26, iss. 15, no. 2, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, epidemiology, Europe, Public Health

55 entries « 1 of 3 »

Top-cited MOOD publications

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK
Plessis et al., 2020
Evolution and epidemic spread of SARS-CoV-2 in Brazil
Darlan et al., 2020
Preparedness and vulnerability of African countries against importations of COVID-19: a modelling study
Gilbert et al., 2020
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence
Moritz et al., 2020
Crowding and the shape of COVID-19 epidemics
Rader et al., 2020
Potential short-term outcome of an uncontrolled COVID-19 epidemic in Lombardy, Italy, February to March 2020
Guzzetta et al., 2020
Novel coronavirus (2019-nCoV) early-stage importation risk to Europe, January 2020
Pullano et al., 2020