MOOD publications

MOOD project is at the forefront of European research of infectious disease surveillance and modelling from a data science perspective, investigating the impact of global warming on disease outbreaks, and proposing innovations for building of One Health systems across Europe and the world. 

In the table below are listed all MOOD publications. Use the filter to select the most relevant articles.

71 entries « 3 of 4 »
31.

Oidtman, Rachel J; Omodei, Elisa; Kraemer, Moritz UG; Casteneda-Orjuela, Carlos A; Cruz-Rivera, Erica; Misnaza-Castrillon, Sandra; Cifuentes, Myriam Patricia; Rincon, Luz Emilse; Canon, Viviana; Alarcon, Pedro; others,

Trade-offs between individual and ensemble forecasts of an emerging infectious disease Journal Article

In: medRxiv, 2021.

Abstract | Links | BibTeX | Tags: epidemiology, infectious diseases, Model, Zika

30.

Mateo-Urdiales, Alberto; Alegiani, Stefania Spila; Fabiani, Massimo; Pezzotti, Patrizio; Filia, Antonietta; Massari, Marco; Riccardo, Flavia; Tallon, Marco; Proietti, Valeria; Manso, Martina Del; Puopolo, Maria; Spuri, Matteo; Morciano, Cristina; D’Ancona, Fortunato (Paolo); Cas, Roberto Da; Battilomo, Serena; Bella, Antonino; Menniti-Ippolito, Francesca; group,; registry,

Risk of SARS-CoV-2 infection and subsequent hospital admission and death at different time intervals since first dose of COVID-19 vaccine administration, Italy, 27 December 2020 to mid-April 2021 Journal Article

In: Eurosurveillance, vol. 26, no. 25, 2021.

Links | BibTeX | Tags: Contact tracing, COVID-19, Italy, vaccine

29.

Mateo-Urdiales, Alberto; Fabiani, Massimo; Rosano, Aldo; Vescio, Maria Fenicia; Manso, Martina Del; Bella, Antonino; Riccardo, Flavia; Pezzotti, Patrizio; Regidor, Enrique; Andrianou, Xanthi

Socioeconomic patterns and COVID-19 outcomes before, during and after the lockdown in Italy (2020) Journal Article

In: Health & Place, vol. 71, pp. 102642, 2021, ISSN: 1353-8292.

Abstract | Links | BibTeX | Tags: COVID-19, Deprivation, HEALTH Inequalities, SOCIAL Epidemiology

28.

Marziano, Valentina; Guzzetta, Giorgio; Rondinone, Bruna Maria; Boccuni, Fabio; Riccardo, Flavia; Bella, Antonino; Poletti, Piero; Trentini, Filippo; Pezzotti, Patrizio; Brusaferro, Silvio; Rezza, Giovanni; Iavicoli, Sergio; Ajelli, Marco; Merler, Stefano

Retrospective analysis of the Italian exit strategy from COVID-19 lockdown Journal Article

In: Proceedings of the National Academy of Sciences, vol. 118, no. 4, 2021, ISSN: 0027-8424.

Abstract | Links | BibTeX | Tags:

27.

Guzzetta, Giorgio; Riccardo, Flavia; Marziano, Valentina; Poletti, Piero; Trentini, Filippo; Bella, Antonino; Andrianou, Xanthi; Manso, Martina Del; Fabiani, Massimo; Bellino, Stefania; Boros, Stefano; Urdiales, Alberto Mateo; Vescio, Maria Fenicia; Piccioli, Andrea; Brusaferro, Silvio; Rezza, Giovanni; Pezzotti, Patrizio; Ajelli, Marco; Merler, Stefano; Group, COVID-19 Working

Impact of a Nationwide Lockdown on SARS-CoV-2 Transmissibility, Italy Bachelor Thesis

2021.

Abstract | Links | BibTeX | Tags: COVID-19, Italy, lock-down, measures

26.

Lemey, Philippe; Hong, Samuel L; Hill, Verity; Baele, Guy; Poletto, Chiara; Colizza, Vittoria; O’Toole, Áine; McCrone, John T.; Andersen, Kristian G.; Worobey, Michael; Nelson, Martha I.; Rambaut, Andrew; Suchard, Marc A.

Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2 Journal Article

In: Nature Communications, vol. 11, no. 5110, 2020.

Abstract | Links | BibTeX | Tags: COVID-19, Ecological epidemiology, phylogenetic

25.

Pinotti, Francesco; Domenico, Laura Di; Ortega, Ernesto; Mancastroppa, Marco; Pullano, Giulia; Valdano, Eugenio; Boëlle, Pierre-Yves; Poletto, Chiara; Colizza, Vittoria

Tracing and analysis of 288 early SARS-CoV-2 infections outside China: A modeling study Journal Article

In: PLOS Medicine, vol. 17, no. 7, pp. 1-13, 2020.

Abstract | Links | BibTeX | Tags: China, Contact tracing, COVID-19, Model

24.

Valentin, Sarah; Lancelot, Renaud; Roche, Mathieu

Automated Processing of Multilingual Online News for the Monitoring of Animal Infectious Diseases Inproceedings

In: Proceedings of the LREC 2020 Workshop on Multilingual Biomedical Text Processing (MultilingualBIO 2020), pp. 33–36, European Language Resources Association, Marseille, France, 2020, ISBN: 979-10-95546-65-8.

Abstract | Links | BibTeX | Tags: Animal disease surveillance, detection, monitoring, Text mining

23.

Pullano, Giulia; Pinotti, Francesco; Valdano, Eugenio; Boëlle, Pierre-Yves; Poletto, Chiara; Colizza, Vittoria

Novel coronavirus (2019-nCoV) early-stage importation risk to Europe, January 2020 Journal Article

In: Eurosurveillance, vol. 25, no. 4, 2020.

Abstract | Links | BibTeX | Tags: airplanes, COVID-19, Europe, mobility

22.

Marini, Giovanni; Manica, Mattia; Arnoldi, Daniele; Inama, Enrico; Ros`a, Roberto; Rizzoli, Annapaola

Influence of temperature on the life-cycle dynamics of Aedes albopictus population established at temperate latitudes: A laboratory experiment Journal Article

In: Insects, vol. 11, no. 11, pp. 808, 2020.

Abstract | Links | BibTeX | Tags: Animal disease surveillance, invasive species, Italy, mosquito bionomics, mosquito dynamics, vector

21.

Ruktanonchai, Nick Warren; Floyd, JR; Lai, Shengjie; Ruktanonchai, Corrine Warren; Sadilek, Adam; Rente-Lourenco, Pedro; Ben, Xue; Carioli, Alessandra; Gwinn, Joshua; Steele, JE; others,

Assessing the impact of coordinated COVID-19 exit strategies across Europe Journal Article

In: Science, vol. 369, no. 6510, pp. 1465–1470, 2020.

Abstract | Links | BibTeX | Tags: COVID-19, Europe, lock-down, measures, transmission

20.

Zhang, Juanjuan; Litvinova, Maria; Liang, Yuxia; Wang, Yan; Wang, Wei; Zhao, Shanlu; Wu, Qianhui; Merler, Stefano; Viboud, Cécile; Vespignani, Alessandro; others,

Changes in contact patterns shape the dynamics of the COVID-19 outbreak in China Journal Article

In: Science, vol. 368, no. 6498, pp. 1481–1486, 2020.

Abstract | Links | BibTeX | Tags: China, COVID-19, mobility, outbreak, transmission

19.

Roche, Mathieu

COVID-19 and Media datasets: Period-and location-specific textual data mining Journal Article

In: Data in brief, vol. 33, pp. 106356, 2020.

Abstract | Links | BibTeX | Tags: COVID-19, machine learning, media extraction, Text mining

18.

Rader, Benjamin; Scarpino, Samuel V; Nande, Anjalika; Hill, Alison L; Adlam, Ben; Reiner, Robert C; Pigott, David M; Gutierrez, Bernardo; Zarebski, Alexander E; Shrestha, Munik; others,

Crowding and the shape of COVID-19 epidemics Journal Article

In: Nature medicine, vol. 26, no. 12, pp. 1829–1834, 2020.

Abstract | Links | BibTeX | Tags: COVID-19, epidemiology, population dynamics

17.

Lai, Shengjie; Ruktanonchai, Nick W; Zhou, Liangcai; Prosper, Olivia; Luo, Wei; Floyd, Jessica R; Wesolowski, Amy; Santillana, Mauricio; Zhang, Chi; Du, Xiangjun; others,

Effect of non-pharmaceutical interventions to contain COVID-19 in China Journal Article

In: nature, vol. 585, no. 7825, pp. 410–413, 2020.

Abstract | Links | BibTeX | Tags: COVID-19, epidemiology, health policy, Model

16.

Dellicour, Simon; Lequime, Sebastian; Vrancken, Bram; Gill, Mandev S; Bastide, Paul; Gangavarapu, Karthik; Matteson, Nathaniel L; Tan, Yi; Plessis, Louis Du; Fisher, Alexander A; others,

Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework Journal Article

In: Nature communications, vol. 11, no. 1, pp. 1–11, 2020.

Abstract | Links | BibTeX | Tags: Ecological epidemiology, Molecular ecology, phylogenetic, West Nile Virus

15.

Pullano, Giulia; Valdano, Eugenio; Scarpa, Nicola; Rubrichi, Stefania; Colizza, Vittoria

Evaluating the effect of demographic factors, socioeconomic factors, and risk aversion on mobility during the COVID-19 epidemic in France under lockdown: a population-based study Journal Article

In: The Lancet Digital Health, vol. 2, no. 12, pp. e638–e649, 2020.

Abstract | Links | BibTeX | Tags: big data, contac tracing, COVID-19, epidemiology, France, measures, mobility, transmission

14.

Candido, Darlan S; Claro, Ingra M; Jesus, Jaqueline G De; Souza, William M; Moreira, Filipe RR; Dellicour, Simon; Mellan, Thomas A; Plessis, Louis Du; Pereira, Rafael HM; Sales, Flavia CS; others,

Evolution and epidemic spread of SARS-CoV-2 in Brazil Journal Article

In: Science, vol. 369, no. 6508, pp. 1255–1260, 2020.

Abstract | Links | BibTeX | Tags: big data, Brazil, Contact tracing, COVID-19, epidemiology, measures, mobility, transmission

13.

Zhang, Juanjuan; Litvinova, Maria; Wang, Wei; Wang, Yan; Deng, Xiaowei; Chen, Xinghui; Li, Mei; Zheng, Wen; Yi, Lan; Chen, Xinhua; others,

Evolving epidemiology and transmission dynamics of coronavirus disease 2019 outside Hubei province, China: a descriptive and modelling study Journal Article

In: The Lancet Infectious Diseases, vol. 20, no. 7, pp. 793–802, 2020.

Abstract | Links | BibTeX | Tags: China, COVID-19, epidemiology, transmission

12.

Tiseo, Katie; Huber, Laura; Gilbert, Marius; Robinson, Timothy P.; Boeckel, Thomas P. Van

Global Trends in Antimicrobial Use in Food Animals from 2017 to 2030 Journal Article

In: Antibiotics, vol. 9, no. 12, 2020, ISSN: 2079-6382.

Abstract | Links | BibTeX | Tags: AMR, Animal disease surveillance, Anitmicrobial Resistance, Human health, Model

71 entries « 3 of 4 »

Top-cited MOOD publications

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK
Plessis et al., 2020
Evolution and epidemic spread of SARS-CoV-2 in Brazil
Darlan et al., 2020
Preparedness and vulnerability of African countries against importations of COVID-19: a modelling study
Gilbert et al., 2020
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence
Moritz et al., 2020
Crowding and the shape of COVID-19 epidemics
Rader et al., 2020
Potential short-term outcome of an uncontrolled COVID-19 epidemic in Lombardy, Italy, February to March 2020
Guzzetta et al., 2020
Novel coronavirus (2019-nCoV) early-stage importation risk to Europe, January 2020
Pullano et al., 2020