MOOD publications

MOOD project is at the forefront of European research of infectious disease surveillance and modelling from a data science perspective, investigating the impact of global warming on disease outbreaks, and proposing innovations for building of One Health systems across Europe and the world. 

In the table below are listed all MOOD publications. Use the filter to select the most relevant articles.

70 entries « 1 of 4 »
70.

Valentin, Sarah; Arsevska, Elena; Mercier, Alizé; Falala, Sylvain; Rabatel, Julien; Lancelot, Renaud; Roche, Mathieu

PADI-web: An Event-Based Surveillance System for Detecting, Classifying and Processing Online News Conference

Human Language Technology. Challenges for Computer Science and Linguistics, vol. 12598, Springer International Publishing, 2022, ISBN: 978-3-030-66526-5.

Abstract | Links | BibTeX | Tags: animal health, classification, epidemic intelligence, information extraction, Text mining, web monitoring

69.

Schaeffer, Camille; Interdonato, Roberto; Lancelot, Renaud; Roche, Mathieu; Teisseire, Maguelonne

Labeled entities from social media data related to avian influenza disease Journal Article Forthcoming

In: Data in Brief, vol. 43, pp. 108317, Forthcoming, ISSN: 2352-3409.

Abstract | Links | BibTeX | Tags: avian influenza, epidemiology, named entity recognition, social networks, Text mining

68.

Arınık, Nejat; Interdonato, Roberto; Roche, Mathieu; Teisseire, Maguelonne.

Inferring the transmission dynamics of Avian Influenza from news and environmental data Conference Forthcoming

NetSci (Network Science Society) , Forthcoming.

BibTeX | Tags:

67.

Menya, Edmond; Roche, Mathieu; Interdonato, Roberto; Owuor, Dickson

Enriching Epidemiological Thematic Features For Disease Surveillance Corpora Classification Conference

roceedings of the International Conference on Language Resources and Evaluation, LREC, 2022.

BibTeX | Tags:

66.

Syed, Mehtab Alam; Arsevska, Elena; Roche, Mathieu; Teisseire, Maguelonne

GeoXTag: Relative Spatial Information Extraction and Tagging of Unstructured Text Conference

Proceedings of the 25th AGILE Conference on Geographic Information Science, vol. 3, Copernicus Publications, 2022.

Abstract | Links | BibTeX | Tags: GeoParser, GeoTagger, natural language processing, spatial information

65.

Wongnak, Phrutsamon; Bord, Séverine; Jacquot, Maude; Agoulon, Albert; Beugnet, Frédéric; Bournez, Laure; Cèbe, Nicolas; Chevalier, Adélie; Cosson, Jean-François; Dambrine, Naïma; Hoch, Thierry; Huard, Frédéric; Korboulewsky, Nathalie; Lebert, Isabelle; Madouasse, Aurélien; Mårell, Anders; Moutailler, Sara; Plantard, Olivier; Pollet, Thomas; Poux, Valérie; René-Martellet, Magalie; Vayssier-Taussat, Muriel; Verheyden, Hélène; Vourc’h, Gwenaël; Chalvet-Monfray, Karine

Meteorological and climatic variables predict the phenology of Ixodes ricinus nymph activity in France, accounting for habitat heterogeneity. Journal Article

In: Nature Scientific Reports, vol. 7833, iss. 12, 2022.

Abstract | Links | BibTeX | Tags: Climate, climate change, disease ecology, France, infectious diseases, ixodes, ticks, vector

64.

Alam, Syed Mehtab; Arsevska, Elena; Roche, Mathieu; Teisseire, Maguelonne

A Data-Driven Score Model to Assess Online News Articles in Event-Based Surveillance System Conference

Information Management and Big Data, vol. 1577, Springer International Publishing, 2022.

Abstract | BibTeX | Tags: data quality, natural language processing, Text mining

63.

Valentin, Sarah; Lancelot, Renaud; Roche, Mathieu

Fusion of spatiotemporal and thematic features of textual data for animal disease surveillance Journal Article

In: Information Processing in Agriculture, 2022, ISSN: 2214-3173.

Abstract | Links | BibTeX | Tags: Animal disease surveillance, fusion, ranking, Text mining

62.

Faucher, Benjamin; Assab, Rania; Roux, Jonathan; Levy-Bruhl, Daniel; Kiem, Cécile Tran; Cauchemez, Simon; Zanetti, Laura; Colizza, Vittoria; Boëlle, Pierre-Yves; Poletto, Chiara

Agent-based modelling of reactive vaccination of workplaces and schools against COVID-19 Journal Article

In: Nature Communications, vol. 13, no. 1414, 2022.

Abstract | Links | BibTeX | Tags: COVID-19

61.

Roche, Mathieu; Teisseire, Maguelonne

Integrating Textual Data into Heterogeneous Data Ingestion Processing Conference

2021 IEEE International Conference on Big Data (Big Data), IEEE, Orlando, FL, USA, 2022, ISBN: 978-1-6654-3902-2.

Abstract | Links | BibTeX | Tags: data integration, data mining, image analysis, natural language processing, Text mining

60.

Valdano, Eugenio; Lee, Jonggul; Rubrichi, Stefania; Colizza, Vittoria

Mobility during the first week of the second lockdown in France Technical Report

2021.

Abstract | Links | BibTeX | Tags: COVID-19, France, lock-down, surveillance

59.

Pullano, Giulia; Domenico, Laura Di; Colizza, Vittoria

Telework and other measures reducing the presence at work to slow down COVID-19pdm in France (Sept 2020) Technical Report

2021.

Abstract | Links | BibTeX | Tags: COVID-19, epidemiology, France, measures

58.

Pullano, Giulia; Domenico, Laura Di; Sabbatini, Chiara E.; Colizza, Vittoria

Expected impact of exit strategies after the second lockdown - France, Nov 2020 Technical Report

2021.

Abstract | Links | BibTeX | Tags: COVID-19, France, lock-down, measures

57.

Kraemer, Moritz U. G.; Fraser, Oliver G. Pybusand; Cauchemez, Christophe; Rambaut, Simon; Cowling, Andrew; Benjamin, J.

Monitoring key epidemiological parameters of SARS-CoV-2 transmission Journal Article

In: Nature Medicine, vol. 27, no. 1854–1855 , pp. 1–2, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, epidemiology, transmission

56.

Camille, Schaeffer; Roberto, Interdonato; Lancelot, Renaud; Roche, Mathieu; Teisseire, Maguelonne.

Social network data and epidemiological intelligence: A case study of avian influenza Journal Article

In: International Journal of Infectious Diseases, vol. 116, pp. 99, 2021.

Abstract | BibTeX | Tags: avian influenza, Event extraction, social networks

55.

Syed, Mehtab Alam; Decoupes, Rémy; Arsevska, Elena; Roche, Mathieu; Teisseire, Maguelonne

Spatial opinion mining from COVID-19 twitter data Journal Article

In: International Journal of Infectious Diseases, vol. 116, iss. 549, pp. 527, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, public opinion, social networks, Text mining

54.

Faria, Nuno R.; Mellan, Thomas A.; Whittaker, Charles; Claro, Ingra M.; da S. Candido, Darlan; Mishra, Swapnil; Crispim, Myuki A. E.

Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil Journal Article

In: Science, vol. 372, no. 6544, pp. 815-821, 2021.

Abstract | Links | BibTeX | Tags: Brazil, COVID-19, epidemiology, phylogenetic

53.

Decoupes, Rémy; Rodrique, Kafando; Roche, Mathieu; Teisseire, Maguelonne

H-TFIDF: What makes areas specific over time in the massive flow of tweets related to the covid pandemic? Journal Article

In: AGILE: GIScience Series, vol. 2, no. 4, pp. 1-8, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, EBS, media extraction, Model, population dynamics, Public Health, Twitter

52.

Domenico, Laura Di; Sabbatini, Chiara E.; Pullano, Giulia; Lévy-Bruhl, Daniel; Colizza, Vittoria

Impact of lockdown on COVID-19 epidemic in Ile-de-France and possible exit strategies Journal Article

In: medRxiv, no. 2, 2021.

Abstract | Links | BibTeX | Tags: COVID-19, epidemiology, Europe, Public Health

51.

Huang, Bo; Wang, Jionghua; Cai, Jixuan; Yao, Shiqi; Chan, Paul Kay Sheung; Tam, Tony Hong-wing; Hong, Ying-Yi; Ruktanonchai, Corrine W.; Carioli, Alessandra; Floyd, Jessica R.; Ruktanonchai, Nick W.; Yang, Weizhong; Li, Zhongjie; Tatem, Andrew J.; Lai, Shengjie

Integrated vaccination and physical distancing interventions to prevent future COVID-19 waves in Chinese cities Journal Article

In: Nature Human Behaviour, vol. 5, pp. 695–705, 2021.

Abstract | Links | BibTeX | Tags: China, COVID-19, epidemiology, vaccine

70 entries « 1 of 4 »

Top-cited MOOD publications

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK
Plessis et al., 2020
Evolution and epidemic spread of SARS-CoV-2 in Brazil
Darlan et al., 2020
Preparedness and vulnerability of African countries against importations of COVID-19: a modelling study
Gilbert et al., 2020
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence
Moritz et al., 2020
Crowding and the shape of COVID-19 epidemics
Rader et al., 2020
Potential short-term outcome of an uncontrolled COVID-19 epidemic in Lombardy, Italy, February to March 2020
Guzzetta et al., 2020
Novel coronavirus (2019-nCoV) early-stage importation risk to Europe, January 2020
Pullano et al., 2020